From eyvaz_isaev at yahoo.com Sun May 1 15:34:52 2005 From: eyvaz_isaev at yahoo.com (Eyvaz Isaev) Date: Sun, 1 May 2005 06:34:52 -0700 (PDT) Subject: [Pw_forum] Structural relaxation In-Reply-To: 6667 Message-ID: <20050501133452.45778.qmail@web60325.mail.yahoo.com> Hi Marcos, > What sort of algorithm is used for the vc-relax? For vc-relax calculations INPUT_PW states that there are 2 possible dynamics you can use: 1) 'damp-pr': damped (Beeman) dynamics of the Parrinello-Raman extended lagrangian 2) 'damp-w': damped (Beeman) dynamics of the new Wentzcovitch extended lagrangian > is it some sort of md algorithm? Yes, I think so. You can read more in Marx & Hutter's textbook (see www.cpmd.org). For more references see refman.tex in /Doc. Bests, Eyvaz. __________________________________________________ Do You Yahoo!? Tired of spam? Yahoo! Mail has the best spam protection around http://mail.yahoo.com From sunsr at ihep.ac.cn Mon May 2 05:36:31 2005 From: sunsr at ihep.ac.cn (Shaorui Sun) Date: Mon, 2 May 2005 11:36:31 +0800 Subject: [Pw_forum] question about the Zn pseudopotential Message-ID: <200505020315.j423FaMp012035@mail.ihep.ac.cn> Dear all: I try to produce the Zn pseudopotential. and the input file for ld1 is as follows: &input title='Zn', zed=30.0, rel=1, beta=0.5, rlderiv=2.4, eminld=-4.0, emaxld=4.0, deld=0.02d0, nld=3, config='[Ar] 3d10 4s2 4p0', iswitch=3, dft='LDA', / &test pseudotype=2, nconf=1, / 3 4S 1 0 2.00 0.00 2.30 2.30 1 4P 2 1 0.00 0.00 2.30 2.30 1 3D 3 2 10.00 0.00 2.30 2.30 1 &inputp lloc=2, file_pseudopw='/home/wien2k/espresso/propseu/Zn.mt', zval=2.d0, tm=.true. / 3 4S 1 0 2.00 0.00 2.30 2.30 4P 2 1 0.00 0.00 2.30 2.30 3D 3 2 10.00 0.15 2.30 2.30 ---------------------------------------------- *********************************************************************** but the ld1 program runs without stopping,and the output informations as follows: ********************************************************************* program ld1 starts. version 20-May-04 today is 24Apr2005 at 12:12:48 -------------------- All-electron run ------------------------------ Zn scalar relativistic calculation atomic number is 30.00 dft =LDA lsd =0 sic =0 latt =0 beta=0.50 tr2=1.0E-14 mesh =1201 r(mesh) = 99.36527 xmin = -7.00 dx = 0.01250 n l nl e(Ryd) e(Ha) e(eV) 1 0 1S 1( 2.00) -698.7683 -349.3841 -9507.3013 2 0 2S 1( 2.00) -84.9778 -42.4889 -1156.1912 2 1 2P 1( 6.00) -73.7532 -36.8766 -1003.4715 3 0 3S 1( 2.00) -9.4537 -4.7269 -128.6258 3 1 3P 1( 6.00) -6.1196 -3.0598 -83.2614 3 2 3D 1(10.00) -0.7660 -0.3830 -10.4221 4 0 4S 1( 2.00) -0.4576 -0.2288 -6.2257 4 1 4P 1( 0.00) -0.0907 -0.0454 -1.2341 eps = 5.3E-15 iter = 17 Etot = -3586.632153 Ry, -1793.316077 Ha, -48798.999750 eV Ekin = 3642.289263 Ry, 1821.144631 Ha, 49556.259254 eV Encl = -8648.418320 Ry, -4324.209160 Ha, -117668.649973 eV Eh = 1557.020742 Ry, 778.510371 Ha, 21184.512815 eV Exc = -137.523839 Ry, -68.761919 Ha, -1871.121846 eV Evxt = 0.000000 Ry, 0.000000 Ha, 0.000000 eV Epseu= 0.000000 Ry, 0.000000 Ha, 0.000000 eV normalization and overlap integrals s(1S/1S) = 1.000000 = 0.0504 = 0.0034 r(max) = 0.0329 s(1S/2S) = -0.004323 s(1S/3S) = -0.001612 s(1S/4S) = -0.000384 s(2S/2S) = 1.000000 = 0.2266 = 0.0606 r(max) = 0.1894 s(2S/3S) = -0.000937 s(2S/4S) = -0.000219 s(2P/2P) = 1.000000 = 0.1985 = 0.0483 r(max) = 0.1513 s(2P/3P) = -0.000748 s(2P/4P) = -0.000107 s(3S/3S) = 1.000000 = 0.6823 = 0.5385 r(max) = 0.5908 s(3S/4S) = -0.000128 s(3P/3P) = 1.000000 = 0.7141 = 0.6034 r(max) = 0.5908 s(3P/4P) = -0.000066 s(3D/3D) = 1.000000 = 0.9120 = 1.1335 r(max) = 0.5620 s(4S/4S) = 1.000000 = 2.6302 = 8.1216 r(max) = 2.0882 s(4P/4P) = 1.000000 = 4.1466 = 21.1002 r(max) = 3.0383 -------------------- End of All-electron run ---------------------- --------------- Generating NC pseudopotential --------------- Generating local potential, lloc= 2 Wfc 4S rcut= 2.150 Using Troullier-Martins method This function has 0 nodes for 0 < r < 2.168 Wfc 4P rcut= 2.150 Using Troullier-Martins method This function has 0 nodes for 0 < r < 2.168 solution not found in ascheqps ------------ End of pseudopotential generation -------------------- -------------------- All-electron run ------------------------------ Zn scalar relativistic calculation atomic number is 30.00 dft =LDA lsd =0 sic =0 latt =0 beta=0.50 tr2=1.0E-14 mesh =1201 r(mesh) = 99.36527 xmin = -7.00 dx = 0.01250 n l nl e(Ryd) e(Ha) e(eV) 1 0 1S 1( 2.00) -698.7683 -349.3841 -9507.3013 2 0 2S 1( 2.00) -84.9778 -42.4889 -1156.1912 2 1 2P 1( 6.00) -73.7532 -36.8766 -1003.4715 3 0 3S 1( 2.00) -9.4537 -4.7269 -128.6258 3 1 3P 1( 6.00) -6.1196 -3.0598 -83.2614 3 2 3D 1(10.00) -0.7660 -0.3830 -10.4221 4 0 4S 1( 2.00) -0.4576 -0.2288 -6.2257 4 1 4P 1( 0.00) -0.0907 -0.0454 -1.2341 eps = 5.3E-15 iter = 17 Etot = -3586.632153 Ry, -1793.316077 Ha, -48798.999750 eV Ekin = 3642.289263 Ry, 1821.144631 Ha, 49556.259254 eV Encl = -8648.418320 Ry, -4324.209160 Ha, -117668.649973 eV Eh = 1557.020742 Ry, 778.510371 Ha, 21184.512815 eV Exc = -137.523839 Ry, -68.761919 Ha, -1871.121846 eV Evxt = 0.000000 Ry, 0.000000 Ha, 0.000000 eV Epseu= 0.000000 Ry, 0.000000 Ha, 0.000000 eV normalization and overlap integrals s(1S/1S) = 1.000000 = 0.0504 = 0.0034 r(max) = 0.0329 s(1S/2S) = -0.004323 s(1S/3S) = -0.001612 s(1S/4S) = -0.000384 s(2S/2S) = 1.000000 = 0.2266 = 0.0606 r(max) = 0.1894 s(2S/3S) = -0.000937 s(2S/4S) = -0.000219 s(2P/2P) = 1.000000 = 0.1985 = 0.0483 r(max) = 0.1513 s(2P/3P) = -0.000748 s(2P/4P) = -0.000107 s(3S/3S) = 1.000000 = 0.6823 = 0.5385 r(max) = 0.5908 s(3S/4S) = -0.000128 s(3P/3P) = 1.000000 = 0.7141 = 0.6034 r(max) = 0.5908 s(3P/4P) = -0.000066 s(3D/3D) = 1.000000 = 0.9120 = 1.1335 r(max) = 0.5620 s(4S/4S) = 1.000000 = 2.6302 = 8.1216 r(max) = 2.0882 s(4P/4P) = 1.000000 = 4.1466 = 21.1002 r(max) = 3.0383 -------------------- End of All-electron run ---------------------- -------------- Testing the pseudopotential ------------------------ Try bisec -11.0432303256025 0.201303338090157 Try bisec -11.0432303256025 -9.85375857621207 Try bisec -11.0432303256025 -9.87708255169033 Try bisec -11.0432303256025 -9.89994919431604 Try bisec -11.0432303256025 -9.92236747140009 Try bisec -11.0432303256025 -9.94434617442370 Try bisec -11.0432303256025 -9.96589392248599 Try bisec -11.0432303256025 -9.98701916568438 Try bisec -11.0432303256025 -10.0077301884279 Try bisec -11.0432303256025 -10.0280351126862 Try bisec -11.0432303256025 -10.0479419011747 Try bisec -11.0432303256025 -10.0674583604773 Try bisec -11.0432303256025 -10.0865921441072 Try bisec -11.0432303256025 -10.1053507555091 Try bisec -11.0432303256025 -10.1237415510011 *************************************************************** Who could give me some direction, or suggestion? Best Regards! S. R. Sun --------------------------------------------- Beijing Synchrotron Radiation Facility Institute of High Energy Physics Chinese Academy of Sciences P. O. Box 918, 100049 Beijing P. R. China Tel: 0086+10 88236710 email:sunsr at ihep.ac.cn From a_ivanov at td.lpi.ru Mon May 2 12:17:35 2005 From: a_ivanov at td.lpi.ru (Andrey V. Ivanov) Date: Mon, 2 May 2005 14:17:35 +0400 Subject: [Pw_forum] error in phonon calculation Message-ID: <20050502101735.M21152@td.lpi.ru> Dear PWSCF users, When I calculated phonon spectrum in Ca for phonon DOS,I have a error in some points: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % from phq_init : error # 1 wrong order of k points %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% %% This error appears when I calculate ph-file. I calculate phonon spectrum in automatic generate points for mesh 8 8 8 0 0 0. And in some points I have this error, but in others points this error did'nt appear. Please, help me From giannozz at nest.sns.it Mon May 2 13:24:17 2005 From: giannozz at nest.sns.it (Paolo Giannozzi) Date: Mon, 2 May 2005 13:24:17 +0200 (CEST) Subject: [Pw_forum] question about the Zn pseudopotential In-Reply-To: <200505020315.j423FaMp012035@mail.ihep.ac.cn> References: <200505020315.j423FaMp012035@mail.ihep.ac.cn> Message-ID: On Mon, 2 May 2005, Shaorui Sun wrote: > &inputp > lloc=2, > file_pseudopw='/home/wien2k/espresso/propseu/Zn.mt', > zval=2.d0, 2 valence electrons > tm=.true. > / > 3 > 4S 1 0 2.00 0.00 2.30 2.30 > 4P 2 1 0.00 0.00 2.30 2.30 > 3D 3 2 10.00 0.15 2.30 2.30 2+0+10=12 valence electrons Paolo From eyvaz_isaev at yahoo.com Mon May 2 13:30:56 2005 From: eyvaz_isaev at yahoo.com (Eyvaz Isaev) Date: Mon, 2 May 2005 04:30:56 -0700 (PDT) Subject: [Pw_forum] error in phonon calculation In-Reply-To: 6667 Message-ID: <20050502113056.90419.qmail@web60311.mail.yahoo.com> Dear Andrey, More likely, the error arises before phonon DOS calculations. Please check your nscf out file. This kind of error is due to unfinished nscf calculation. Probably you have an error like "info =/= 0". Some time ago I did the same calculations for Ca and met no error. Bests, Eyvaz. --- "Andrey V. Ivanov" wrote: > Dear PWSCF users, > > When I calculated phonon spectrum in Ca for phonon > DOS,I have a error in > some points: > %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% > % > from phq_init : error # 1 > wrong order of k points > > %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% > %% > This error appears when I calculate ph-file. I > calculate phonon spectrum in > automatic generate points for mesh 8 8 8 0 0 0. And > in some points I have > this error, but in others points this error did'nt > appear. > Please, help me > _______________________________________________ > Pw_forum mailing list > Pw_forum at pwscf.org > http://www.democritos.it/mailman/listinfo/pw_forum > __________________________________________________ Do You Yahoo!? Tired of spam? Yahoo! Mail has the best spam protection around http://mail.yahoo.com From giannozz at nest.sns.it Mon May 2 13:51:36 2005 From: giannozz at nest.sns.it (Paolo Giannozzi) Date: Mon, 2 May 2005 13:51:36 +0200 (CEST) Subject: [Pw_forum] davidson without overlap In-Reply-To: <1114695657.1052.11.camel@gurosai.polytechnique.fr> References: <20050421053747.19386.41850.Mailman@democritos.sissa.it> <1114695657.1052.11.camel@gurosai.polytechnique.fr> Message-ID: On Thu, 28 Apr 2005, Virginie Quequet wrote: > In previous version of PWSCF (1.2.0), it was possible to choose > diagonalization = david_nooverlap. I wonder why it is no longer possible, > do this method cause particular problem? no, but it didn't have any advantage on davidson diagonalization with overlap, that works also for ultrasoft pseudopotentials, so finally we retained only one version (the difference is whether you generate a subspace with orthonormalized correction vectors and the current estimated wavefunctions, and diagonalize with conventional diagonalization; or whether you use unnormalized correction vectors instead and diagonalize with an overlap matrix) Paolo From zhupwscf at yahoo.com.cn Mon May 2 18:13:16 2005 From: zhupwscf at yahoo.com.cn (=?gb2312?q?=C1=D9=20=D7=A1?=) Date: Tue, 3 May 2005 00:13:16 +0800 (CST) Subject: [Pw_forum] error-but nothing Message-ID: <20050502161316.36833.qmail@web15507.mail.cnb.yahoo.com> Dear everyone: I'm a new user of pwscf, I use the fhi98pp pseudopotential ,but there is an error 136, and say nothing, I user other pseudopotential ,it's the same error. I don't know what's wrong. Best regards! --------------------------------- Do You Yahoo!? ??????????????? -------------- next part -------------- An HTML attachment was scrubbed... URL: /pipermail/attachments/20050503/d9ab3be5/attachment.htm From eyvaz_isaev at yahoo.com Mon May 2 19:01:55 2005 From: eyvaz_isaev at yahoo.com (Eyvaz Isaev) Date: Mon, 2 May 2005 10:01:55 -0700 (PDT) Subject: [Pw_forum] error-but nothing In-Reply-To: 6667 Message-ID: <20050502170155.81909.qmail@web60317.mail.yahoo.com> Hello, It means that it does not depend on PsP, at least. I suggest, nobody will be able to say something until you send your ouput file. Bests, Eyvaz. --- БЩ ЧЎ wrote: > Dear everyone: > I'm a new user of pwscf, I use the fhi98pp > pseudopotential ,but there is an error 136, and say > nothing, I user other pseudopotential ,it's the > same error. I don't know what's wrong. > > > Best regards! > > > > > --------------------------------- > Do You Yahoo!? > ЧўІбКАЅзТ?БчЖ?ЦК?ДСЕ?ўГв?С?зУК __________________________________________________ Do You Yahoo!? Tired of spam? Yahoo! Mail has the best spam protection around http://mail.yahoo.com From mousumi at jncasr.ac.in Tue May 3 10:13:19 2005 From: mousumi at jncasr.ac.in (Mousumi Upadhyay Kahaly) Date: Tue, 3 May 2005 13:43:19 +0530 (IST) Subject: [Pw_forum] Co crystal calculation In-Reply-To: <20050430184308.58813.qmail@web60318.mail.yahoo.com> References: 6667 <20050430184308.58813.qmail@web60318.mail.yahoo.com> Message-ID: <59921.202.41.111.151.1115107999.squirrel@202.41.111.151> Hi all, I am trying to do Cobalt crystal relaxation calculation with PWSCF. the unit cell is hexagonal and there are 2 atoms/cell. In the pseudopotential, Z=9.000000, So, total no of atoms/ cell=18.0000. I am using nspin=2. Cobalt is ferromagnetic. But, due to even number of electrons per unit cell, final magnetization is coming out to be zero which is physically unacceptable! Can you please help me to get rid of this problem? Here is my input file-- best regards, mousumi &control calculation='relax' restart_mode='from_scratch', tstress = .true., prefix='Co_GGA', pseudo_dir = '/export/mousumi/PWscf_GUI_cat3/pseudo/', outdir='/export/mousumi/PWscf_GUI_cat3/acetic_acid_comps/Co_GGA/tmp//' / &system ibrav = 4, celldm(1) = 4.74480009,celldm(3)= 1.60000002, nat = 2, ntyp = 1, ecutwfc = 30.00000 , ecutrho = 180.00000 , nosym = .false. , nbnd = 19, nelec = 18.00, nspin = 2 , starting_magnetization = 1.0 , occupations = 'smearing' , degauss = 0.003 , smearing = 'methfessel-paxton' , lda_plus_u = .false. , / &ELECTRONS electron_maxstep = 150, conv_thr = 1.0d-8 , mixing_beta = 0.6 , / &IONS upscale = 10.0 , / ATOMIC_SPECIES Co 58.93 Co_pbe_ps.uspp.UPF ATOMIC_POSITIONS crystal Co 0.0000000 0.0000000 0.00000000 Co 0.5000000 0.5000000 0.00000000 K_POINTS automatic 7 7 7 -6 -6 -6 From mousumi at jncasr.ac.in Tue May 3 10:46:43 2005 From: mousumi at jncasr.ac.in (Mousumi Upadhyay Kahaly) Date: Tue, 3 May 2005 14:16:43 +0530 (IST) Subject: [Fwd: [Pw_forum] Co crystal calculation] Message-ID: <38307.202.41.111.151.1115110003.squirrel@202.41.111.151> Dear All, Sorry, in my last mail, I wanted to say-- total no of electrons/cell= 18.000 And, at the end of the input file, I was using wrong atomic positions. It should be- ATOMIC_POSITIONS crystal Co 0.0000000 0.0000000 0.00000000 Co 0.6666667 0.3333333 0.50000000 And with this, the problem seems to be solved. regards, mousumi. ---------------------------- Original Message ---------------------------- Subject: [Pw_forum] Co crystal calculation From: "Mousumi Upadhyay Kahaly" Date: Tue, May 3, 2005 1:43 pm To: pw_forum at pwscf.org -------------------------------------------------------------------------- Hi all, I am trying to do Cobalt crystal relaxation calculation with PWSCF. the unit cell is hexagonal and there are 2 atoms/cell. In the pseudopotential, Z=9.000000, So, total no of atoms/ cell=18.0000. I am using nspin=2. Cobalt is ferromagnetic. But, due to even number of electrons per unit cell, final magnetization is coming out to be zero which is physically unacceptable! Can you please help me to get rid of this problem? Here is my input file-- best regards, mousumi &control calculation='relax' restart_mode='from_scratch', tstress = .true., prefix='Co_GGA', pseudo_dir = '/export/mousumi/PWscf_GUI_cat3/pseudo/', outdir='/export/mousumi/PWscf_GUI_cat3/acetic_acid_comps/Co_GGA/tmp//' / &system ibrav = 4, celldm(1) = 4.74480009,celldm(3)= 1.60000002, nat = 2, ntyp = 1, ecutwfc = 30.00000 , ecutrho = 180.00000 , nosym = .false. , nbnd = 19, nelec = 18.00, nspin = 2 , starting_magnetization = 1.0 , occupations = 'smearing' , degauss = 0.003 , smearing = 'methfessel-paxton' , lda_plus_u = .false. , / &ELECTRONS electron_maxstep = 150, conv_thr = 1.0d-8 , mixing_beta = 0.6 , / &IONS upscale = 10.0 , / ATOMIC_SPECIES Co 58.93 Co_pbe_ps.uspp.UPF ATOMIC_POSITIONS crystal Co 0.0000000 0.0000000 0.00000000 Co 0.5000000 0.5000000 0.00000000 K_POINTS automatic 7 7 7 -6 -6 -6 _______________________________________________ Pw_forum mailing list Pw_forum at pwscf.org http://www.democritos.it/mailman/listinfo/pw_forum From eyvaz_isaev at yahoo.com Tue May 3 13:09:11 2005 From: eyvaz_isaev at yahoo.com (Eyvaz Isaev) Date: Tue, 3 May 2005 04:09:11 -0700 (PDT) Subject: [Fwd: [Pw_forum] Co crystal calculation] In-Reply-To: 6667 Message-ID: <20050503110911.27028.qmail@web60318.mail.yahoo.com> Hi, Actually, I did not understand k_points shift. INPUT_PW states that k1,k2,k3 must be 0 (no shift) or 1 (offset by half a grid step). You can consider Co atoms as a different ones, i.e. 2 atoms, and 2 types. Hopefully you know what you should change in this case. degauss you used looks very small. Because you calculate just total energy you can try also tetrahedra for integrating over the BZ. Best regards, Eyvaz. --- Mousumi Upadhyay Kahaly wrote: > Dear All, > > Sorry, in my last mail, I wanted to say-- > > total no of electrons/cell= 18.000 > > And, at the end of the input file, I was using wrong > atomic positions. > It should be- > > ATOMIC_POSITIONS crystal > Co 0.0000000 0.0000000 0.00000000 > Co 0.6666667 0.3333333 0.50000000 > > And with this, the problem seems to be > solved. > > regards, > mousumi. > > > ---------------------------- Original Message > ---------------------------- > Subject: [Pw_forum] Co crystal calculation > From: "Mousumi Upadhyay Kahaly" > > Date: Tue, May 3, 2005 1:43 pm > To: pw_forum at pwscf.org > -------------------------------------------------------------------------- > > Hi all, > > I am trying to do Cobalt crystal > relaxation calculation with > PWSCF. the unit cell is hexagonal and there are 2 > atoms/cell. In > the pseudopotential, Z=9.000000, So, total no of > atoms/ > cell=18.0000. > > I am using nspin=2. Cobalt is > ferromagnetic. But, due to even > number of electrons per unit cell, final > magnetization is coming > out to be zero which is physically unacceptable! > > Can you please help me to get rid of this > problem? Here is my > input file-- > > best regards, > mousumi > > &control > calculation='relax' > restart_mode='from_scratch', > tstress = .true., > prefix='Co_GGA', > pseudo_dir = > '/export/mousumi/PWscf_GUI_cat3/pseudo/', > > outdir='/export/mousumi/PWscf_GUI_cat3/acetic_acid_comps/Co_GGA/tmp//' > / > &system > ibrav = 4, > celldm(1) = > 4.74480009,celldm(3)= 1.60000002, > nat = 2, > ntyp = 1, > ecutwfc = 30.00000 , > ecutrho = 180.00000 , > nosym = .false. , > nbnd = 19, > nelec = 18.00, > nspin = 2 , > starting_magnetization = 1.0 > , > occupations = 'smearing' , > degauss = 0.003 , > smearing = 'methfessel-paxton' , > lda_plus_u = .false. , > / > &ELECTRONS > electron_maxstep = 150, > conv_thr = 1.0d-8 , > mixing_beta = 0.6 , > / > &IONS > upscale = 10.0 , > / > ATOMIC_SPECIES > Co 58.93 Co_pbe_ps.uspp.UPF > ATOMIC_POSITIONS crystal > Co 0.0000000 0.0000000 0.00000000 > Co 0.5000000 0.5000000 0.00000000 > K_POINTS automatic > 7 7 7 -6 -6 -6 > > > _______________________________________________ > Pw_forum mailing list > Pw_forum at pwscf.org > http://www.democritos.it/mailman/listinfo/pw_forum > > > _______________________________________________ > Pw_forum mailing list > Pw_forum at pwscf.org > http://www.democritos.it/mailman/listinfo/pw_forum > __________________________________________________ Do You Yahoo!? Tired of spam? Yahoo! Mail has the best spam protection around http://mail.yahoo.com From zhupwscf at yahoo.com.cn Tue May 3 16:36:24 2005 From: zhupwscf at yahoo.com.cn (=?gb2312?q?=C1=D9=20=D7=A1?=) Date: Tue, 3 May 2005 22:36:24 +0800 (CST) Subject: [Pw_forum] error-but nothing In-Reply-To: 6667 Message-ID: <20050503143624.71379.qmail@web15510.mail.cnb.yahoo.com> Dear Eyvaz: I'm grateful to you for helping me. There is not pseudopotential for Co atom except for fhi98pp pseudopotential of Co atom. The output file said nothing but just error 136, Best regards! Yours sincerely, L.Zhu Eyvaz Isaev ??: Hello, It means that it does not depend on PsP, at least. I suggest, nobody will be able to say something until you send your ouput file. Bests, Eyvaz. --- ?? ?#1038; wrote: > Dear everyone: > I'm a new user of pwscf, I use the fhi98pp > pseudopotential ,but there is an error 136, and say > nothing, I user other pseudopotential ,it's the > same error. I don't know what's wrong. > > > Best regards! > > > > > --------------------------------- > Do You Yahoo!? > ?#1118;#1030;???#1029;???#1041;???#1062;??#1044;???#1118;???#1057;?#1079;?? __________________________________________________ Do You Yahoo!? Tired of spam? Yahoo! Mail has the best spam protection around http://mail.yahoo.com _______________________________________________ Pw_forum mailing list Pw_forum at pwscf.org http://www.democritos.it/mailman/listinfo/pw_forum --------------------------------- Do You Yahoo!? ??????????????? -------------- next part -------------- An HTML attachment was scrubbed... URL: /pipermail/attachments/20050503/25165031/attachment.htm From eyvaz_isaev at yahoo.com Tue May 3 17:41:49 2005 From: eyvaz_isaev at yahoo.com (Eyvaz Isaev) Date: Tue, 3 May 2005 08:41:49 -0700 (PDT) Subject: [Pw_forum] error-but nothing In-Reply-To: 6667 Message-ID: <20050503154149.42691.qmail@web60311.mail.yahoo.com> Dear Zhu, There is a "nearsightseeing" principle in condensed matter physics. According to this principle I don't see your output file, therefore, I do not feel (or see) an error. Bests, Eyvaz. --- БЩ ЧЎ wrote: > Dear Eyvaz: > I'm grateful to you for helping me. > There is not pseudopotential for Co atom > except for fhi98pp pseudopotential of Co atom. The > output file said nothing but just error 136, > > Best regards! > Yours sincerely, > L.Zhu > > Eyvaz Isaev Рґ?А: > Hello, > > It means that it does not depend on PsP, at least. > I suggest, nobody will be able to say something > until you send your ouput file. > > Bests, > Eyvaz. > > --- ?ў?? ?№#1038; > wrote: > > Dear everyone: > > I'm a new user of pwscf, I use the fhi98pp > > pseudopotential ,but there is an error 136, and > say > > nothing, I user other pseudopotential ,it's the > > same error. I don't know what's wrong. > > > > > > Best regards! > > > > > > > > > > --------------------------------- > > Do You Yahoo!? > > > ?№#1118;#1030;?Т???Ў#1029;?Щ?ґ?#1041;?й?Ё?#1062;???#1044;?і???#1118;???У?#1057;?#1079;???? > > __________________________________________________ > Do You Yahoo!? > Tired of spam? Yahoo! Mail has the best spam > protection around > http://mail.yahoo.com > _______________________________________________ > Pw_forum mailing list > Pw_forum at pwscf.org > http://www.democritos.it/mailman/listinfo/pw_forum > > > > --------------------------------- > Do You Yahoo!? > ЧўІбКАЅзТ?БчЖ?ЦК?ДСЕ?ўГв?С?зУК __________________________________________________ Do You Yahoo!? Tired of spam? Yahoo! Mail has the best spam protection around http://mail.yahoo.com From emenendez at macul.ciencias.uchile.cl Wed May 4 18:44:54 2005 From: emenendez at macul.ciencias.uchile.cl (Eduardo Ariel Menendez P) Date: Wed, 4 May 2005 12:44:54 -0400 (CLT) Subject: [Pw_forum] Doubt on pseudopotential Message-ID: Hello, Several elements of the 6th row have 4f elBectrons. Hence, I think that the valence wavefunctions calculated with plane waves should be orthogonal to the core 4f orbitals, and an l=3 channel must be included in the pseudopotential (otherwise it is the local part). See, for instance, the Pb pseudopotential Generated using Vanderbilt code, version 7 3 5 Author: unknown Generation date: 10 6 2004 Automatically converted from original format 1 The Pseudo was generated with a Scalar-Relativistic Calculation 2.30000000000E+00 Local Potential cutoff radius nl pn l occ Rcut Rcut US E pseu 5D 5 2 10.00 10.00000000000 2.30000000000 -1.56457348858 6S 6 0 2.00 10.00000000000 2.50000000000 -0.90577247611 6P 6 1 2.00 10.00000000000 2.50000000000 -0.27269991105 I think it lacks a 5F nonlocal part, so to ensure orthogonality with the core 4F orbitals. I also checks Tl, Au,Ta, and it is the same. For this lack of an F channel there is surely a good reason. Can someone explain me that reason, please? Best regards Eduardo Eduardo A. Menendez Proupin Department of Physics Faculty of Science University of Chile Las Palmeras 3425 ?u?oa, Santiago Chile Phone: 56+2+678 74 11 http://fisica.ciencias.uchile.cl/~emenendez/ From phyliul at nus.edu.sg Thu May 5 10:18:45 2005 From: phyliul at nus.edu.sg (Liu Lei) Date: Thu, 5 May 2005 16:18:45 +0800 Subject: [Pw_forum] compiling problems of espresso-2.1.3 on IBM-rs6000??? Message-ID: <353B84412D651A43BA886B3EDCDB8B9A06A75A@MBOX03.stf.nus.edu.sg> Dear all, I try to compile espresso-2.1.3 on IBM-rs6000, using "./configure --disable-parallel" And then I try example07. The scf and nscf with pw.x is ok, but ph.x refused to work. Here is error message of al.ph.out " bash-2.05a$ more al.ph.out Program PHONON v.2.1.3 starts ... Today is 5May2005 at 16:11:29 Ultrasoft (Vanderbilt) Pseudopotentials Reading file al.save ... read complete Reading file al.save ... read complete nbndx = 6 nbnd = 6 natomwfc = 9 npwx = 125 nelec = 3.00 nkb = 4 ngl = 33 ** ON ENTRY TO ZHPEV PARAMETER NUMBER 1 HAD AN ILLEGAL VALUE " Does anyone know what happened here, and help me kindly? Regards, LIU, LEI -------------- next part -------------- An HTML attachment was scrubbed... URL: /pipermail/attachments/20050505/a5f4ce44/attachment.htm From eyvaz_isaev at yahoo.com Thu May 5 13:37:58 2005 From: eyvaz_isaev at yahoo.com (Eyvaz Isaev) Date: Thu, 5 May 2005 04:37:58 -0700 (PDT) Subject: [Pw_forum] compiling problems of espresso-2.1.3 on IBM-rs6000??? In-Reply-To: 6667 Message-ID: <20050505113758.86248.qmail@web60314.mail.yahoo.com> Hi Liu, It is a famous problem, and explained by Paolo why it happens. So, if you use LAPACK library ftom IBM, then put first -llapack flag. If you use MYLIB=blas_and_lapack then put $(LIBOBJS) before $(LIBS). I would like also say thanks to the Espresso team who managed to get a working Configure on IBM SP computers. Best regards, Eyvaz. --- Liu Lei wrote: > Dear all, > > > > I try to compile espresso-2.1.3 on IBM-rs6000, using > "./configure > --disable-parallel" > > > > > > And then I try example07. > > The scf and nscf with pw.x is ok, but ph.x refused > to work. > > Here is error message of al.ph.out > > " > > bash-2.05a$ more al.ph.out > > > > Program PHONON v.2.1.3 starts ... > > Today is 5May2005 at 16:11:29 > > > > Ultrasoft (Vanderbilt) Pseudopotentials > > > > Reading file al.save ... > > read complete > > > > Reading file al.save ... > > read complete > > > > nbndx = 6 nbnd = 6 natomwfc = > 9 npwx = 125 > > nelec = 3.00 nkb = 4 ngl = > 33 > > ** ON ENTRY TO ZHPEV PARAMETER NUMBER 1 HAD AN > ILLEGAL VALUE > > " > > Does anyone know what happened here, and help me > kindly? > > > > > > Regards, > > > > LIU, LEI > > > > > > Discover Yahoo! Stay in touch with email, IM, photo sharing and more. Check it out! http://discover.yahoo.com/stayintouch.html From sunsr at ihep.ac.cn Thu May 5 16:16:53 2005 From: sunsr at ihep.ac.cn (Shaorui Sun) Date: Thu, 5 May 2005 22:16:53 +0800 Subject: [Pw_forum] to Paolo Giannozzi Message-ID: <200505051355.j45DtbMp003676@mail.ihep.ac.cn> Dear Paolo Giannozzi: I have change the value of "zval" from 2 to 12,but the output information is still seems like that of last time which is shown as follows: *************************************************** program ld1 starts. version 20-May-04 today is 5May2005 at 11:59:37 -------------------- All-electron run ------------------------------ Zn scalar relativistic calculation atomic number is 30.00 dft =LDA lsd =0 sic =0 latt =0 beta=0.50 tr2=1.0E-14 mesh =1201 r(mesh) = 99.36527 xmin = -7.00 dx = 0.01250 n l nl e(Ryd) e(Ha) e(eV) 1 0 1S 1( 2.00) -698.7683 -349.3841 -9507.3013 2 0 2S 1( 2.00) -84.9778 -42.4889 -1156.1912 2 1 2P 1( 6.00) -73.7532 -36.8766 -1003.4715 3 0 3S 1( 2.00) -9.4537 -4.7269 -128.6258 3 1 3P 1( 6.00) -6.1196 -3.0598 -83.2614 3 2 3D 1(10.00) -0.7660 -0.3830 -10.4221 4 0 4S 1( 2.00) -0.4576 -0.2288 -6.2257 4 1 4P 1( 0.00) -0.0907 -0.0454 -1.2341 eps = 5.3E-15 iter = 17 Etot = -3586.632153 Ry, -1793.316077 Ha, -48798.999750 eV Ekin = 3642.289263 Ry, 1821.144631 Ha, 49556.259254 eV Encl = -8648.418320 Ry, -4324.209160 Ha, -117668.649973 eV Eh = 1557.020742 Ry, 778.510371 Ha, 21184.512815 eV Exc = -137.523839 Ry, -68.761919 Ha, -1871.121846 eV Evxt = 0.000000 Ry, 0.000000 Ha, 0.000000 eV Epseu= 0.000000 Ry, 0.000000 Ha, 0.000000 eV normalization and overlap integrals s(1S/1S) = 1.000000 = 0.0504 = 0.0034 r(max) = 0.0329 s(1S/2S) = -0.004323 s(1S/3S) = -0.001612 s(1S/4S) = -0.000384 s(2S/2S) = 1.000000 = 0.2266 = 0.0606 r(max) = 0.1894 s(2S/3S) = -0.000937 s(2S/4S) = -0.000219 s(2P/2P) = 1.000000 = 0.1985 = 0.0483 r(max) = 0.1513 s(2P/3P) = -0.000748 s(2P/4P) = -0.000107 s(3S/3S) = 1.000000 = 0.6823 = 0.5385 r(max) = 0.5908 s(3S/4S) = -0.000128 s(3P/3P) = 1.000000 = 0.7141 = 0.6034 r(max) = 0.5908 s(3P/4P) = -0.000066 s(3D/3D) = 1.000000 = 0.9120 = 1.1335 r(max) = 0.5620 s(4S/4S) = 1.000000 = 2.6302 = 8.1216 r(max) = 2.0882 s(4P/4P) = 1.000000 = 4.1466 = 21.1002 r(max) = 3.0383 -------------------- End of All-electron run ---------------------- --------------- Generating NC pseudopotential --------------- Generating local potential, lloc= 2 Wfc 4S rcut= 2.300 Using Troullier-Martins method This function has 0 nodes for 0 < r < 2.279 Wfc 4P rcut= 2.300 Using Troullier-Martins method This function has 0 nodes for 0 < r < 2.279 solution not found in ascheqps ------------ End of pseudopotential generation -------------------- -------------------- All-electron run ------------------------------ Zn scalar relativistic calculation atomic number is 30.00 dft =LDA lsd =0 sic =0 latt =0 beta=0.50 tr2=1.0E-14 mesh =1201 r(mesh) = 99.36527 xmin = -7.00 dx = 0.01250 n l nl e(Ryd) e(Ha) e(eV) 1 0 1S 1( 2.00) -698.7683 -349.3841 -9507.3013 2 0 2S 1( 2.00) -84.9778 -42.4889 -1156.1912 2 1 2P 1( 6.00) -73.7532 -36.8766 -1003.4715 3 0 3S 1( 2.00) -9.4537 -4.7269 -128.6258 3 1 3P 1( 6.00) -6.1196 -3.0598 -83.2614 3 2 3D 1(10.00) -0.7660 -0.3830 -10.4221 4 0 4S 1( 2.00) -0.4576 -0.2288 -6.2257 4 1 4P 1( 0.00) -0.0907 -0.0454 -1.2341 eps = 5.3E-15 iter = 17 Etot = -3586.632153 Ry, -1793.316077 Ha, -48798.999750 eV Ekin = 3642.289263 Ry, 1821.144631 Ha, 49556.259254 eV Encl = -8648.418320 Ry, -4324.209160 Ha, -117668.649973 eV Eh = 1557.020742 Ry, 778.510371 Ha, 21184.512815 eV Exc = -137.523839 Ry, -68.761919 Ha, -1871.121846 eV Evxt = 0.000000 Ry, 0.000000 Ha, 0.000000 eV Epseu= 0.000000 Ry, 0.000000 Ha, 0.000000 eV normalization and overlap integrals s(1S/1S) = 1.000000 = 0.0504 = 0.0034 r(max) = 0.0329 s(1S/2S) = -0.004323 s(1S/3S) = -0.001612 s(1S/4S) = -0.000384 s(2S/2S) = 1.000000 = 0.2266 = 0.0606 r(max) = 0.1894 s(2S/3S) = -0.000937 s(2S/4S) = -0.000219 s(2P/2P) = 1.000000 = 0.1985 = 0.0483 r(max) = 0.1513 s(2P/3P) = -0.000748 s(2P/4P) = -0.000107 s(3S/3S) = 1.000000 = 0.6823 = 0.5385 r(max) = 0.5908 s(3S/4S) = -0.000128 s(3P/3P) = 1.000000 = 0.7141 = 0.6034 r(max) = 0.5908 s(3P/4P) = -0.000066 s(3D/3D) = 1.000000 = 0.9120 = 1.1335 r(max) = 0.5620 s(4S/4S) = 1.000000 = 2.6302 = 8.1216 r(max) = 2.0882 s(4P/4P) = 1.000000 = 4.1466 = 21.1002 r(max) = 3.0383 -------------------- End of All-electron run ---------------------- -------------- Testing the pseudopotential ------------------------ Try bisec -11.7598161188989 -11.7598161188989 Try bisec -11.7598171188989 -11.7598171188989 Try bisec -11.7598181188989 -11.7598181188989 Try bisec -11.7598191188989 -11.7598191188989 Try bisec -11.7598201188989 -11.7598201188989 Try bisec -11.7598211188989 -11.7598211188989 Try bisec -11.7598221188989 -11.7598221188989 Try bisec -11.7598231188989 -11.7598231188989 Try bisec -11.7598241188989 -11.7598241188989 Try bisec -11.7598251188989 -11.7598251188989 Try bisec -11.7598261188989 -11.7598261188989 Try bisec -11.7598271188989 -11.7598271188989 Try bisec -11.7598281188989 -11.7598281188989 Try bisec -11.7598291188989 -11.7598291188989 Try bisec -11.7598301188989 -11.7598301188989 ********************************************************************** In fact,the ld1 program can not stop with the " Try bisec" one by one. Would you like give me more direction? thank you in advance! Best Regards! S. R. Sun --------------------------------------------- Beijing Synchrotron Radiation Facility Institute of High Energy Physics Chinese Academy of Sciences P. O. Box 918, 100049 Beijing P. R. China Tel: 0086+10 88236710 email:sunsr at ihep.ac.cn From jcconesa at icp.csic.es Thu May 5 18:20:56 2005 From: jcconesa at icp.csic.es (Jose C. Conesa) Date: Thu, 5 May 2005 18:20:56 +0200 Subject: [Pw_forum] Compile error of espresso 2.1.3 Message-ID: <427A6408.26515.651BF00F@localhost> Dear all, I tried to compile the new espresso version in a machine correctly identified as alphaev68-dec- osf5.1, in which I had already compiled successfully version 2.1.2. But now in the compilations I find that, after libraries clib.a, flib.a and ptools.a have been created, the following error appears: f90: Warning: input.f90, line 90: Conflicting attributes or multiple declaration of name. [RD_HT] if_pos, rd_ht, nelup, neldw, occupations, f_inp, pos, nr3b, pseudo_dir, & -------------------^ followed by several errors similar to this one: f90: Error: input.f90, line 211: The same named entity from different modules an d/or program units cannot be referenced. [RD_HT] rd_ht, a, b, c, cosab, cosac, cosbc, alat_ ) ---------------------------^ Then compilation aborts. Please help. An additional comment: following previous discussions in the forum, I suggest that in future releases of the software elements Ti, Zn, Pr and Tb should be included in PW/set_hubbard_l.f90, and the same elements plus V and Cr be included as well in PW/tabd.f90. Best regards, Jose C. Conesa Instituto de Catalisis y Petroleoquimica, CSIC Campus de Cantoblanco 28049 Madrid - Spain Phone Nr. 34-91-5854766 Fax Nr. 34-91-5854760 From proffess at yandex.ru Thu May 5 18:38:15 2005 From: proffess at yandex.ru (Sergey Lisenkov) Date: Thu, 5 May 2005 20:38:15 +0400 (MSD) Subject: [Pw_forum] optimal alpha not found Message-ID: <427A4BF7.000003.12226@tide.yandex.ru> Dear PWscf authors, I got the next message during pw.x run: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% from ewald : error # 1 optimal alpha not found %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% What is that? Sergey From axel.kohlmeyer at theochem.ruhr-uni-bochum.de Thu May 5 18:55:51 2005 From: axel.kohlmeyer at theochem.ruhr-uni-bochum.de (Axel Kohlmeyer) Date: Thu, 5 May 2005 18:55:51 +0200 (CEST) Subject: [Pw_forum] Compile error of espresso 2.1.3 In-Reply-To: <427A6408.26515.651BF00F@localhost> Message-ID: On Thu, 5 May 2005, Jose C. Conesa wrote: JC> Dear all, dear jose, JC> I tried to compile the new espresso version in a machine correctly JC> identified as alphaev68-dec- osf5.1, in which I had already compiled JC> successfully version 2.1.2. But now in the compilations I find that, JC> after libraries clib.a, flib.a and ptools.a have been created, the JC> following error appears: JC> JC> f90: Warning: input.f90, line 90: Conflicting attributes or multiple declaration JC> of name. [RD_HT] JC> if_pos, rd_ht, nelup, neldw, occupations, f_inp, pos, nr3b, pseudo_dir, & JC> -------------------^ JC> JC> followed by several errors similar to this one: JC> JC> f90: Error: input.f90, line 211: The same named entity from different modules an JC> d/or program units cannot be referenced. [RD_HT] JC> rd_ht, a, b, c, cosab, cosac, cosbc, alat_ ) JC> ---------------------------^ JC> JC> Then compilation aborts. Please help. simply remove 'rd_ht,' on line 103 of CPV/input.f90 the alpha compiler is _extremely_ picky and rd_ht was imported twice from the input_parameters module. regards, axel. -- ======================================================================= Dr. Axel Kohlmeyer e-mail: axel.kohlmeyer at theochem.ruhr-uni-bochum.de Lehrstuhl fuer Theoretische Chemie Phone: ++49 (0)234/32-26673 Ruhr-Universitaet Bochum - NC 03/53 Fax: ++49 (0)234/32-14045 D-44780 Bochum http://www.theochem.ruhr-uni-bochum.de/~axel.kohlmeyer/ ======================================================================= If you make something idiot-proof, the universe creates a better idiot. From eyvaz_isaev at yahoo.com Thu May 5 19:43:33 2005 From: eyvaz_isaev at yahoo.com (Eyvaz Isaev) Date: Thu, 5 May 2005 10:43:33 -0700 (PDT) Subject: [Pw_forum] optimal alpha not found In-Reply-To: 6667 Message-ID: <20050505174333.98271.qmail@web60322.mail.yahoo.com> Hello Sergei, May be something wrong with your structure? Actually, the error means that the Ewald sum (ion-ion energy contribution) could not converge for some reason. I have to remind that the Ewald sum consists of two parts: erf(\alpha R)/R and erfc(\alpha R)/R. The first term has a fast convergence in G-space, while the second term converges in R-space. There are also 2 \alpha-dependent contributions, excluded from sums. Optimum \alpha has to be chosen so that it gives good convergence for both G-, and R- sums. Bests, Eyvaz. --- Sergey Lisenkov wrote: > Dear PWscf authors, > > I got the next message during pw.x run: > > %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% > from ewald : error # 1 > optimal alpha not found > > %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% > > What is that? > > Sergey > _______________________________________________ > Pw_forum mailing list > Pw_forum at pwscf.org > http://www.democritos.it/mailman/listinfo/pw_forum > __________________________________ Do you Yahoo!? Yahoo! Mail - Helps protect you from nasty viruses. http://promotions.yahoo.com/new_mail From phyliul at nus.edu.sg Fri May 6 05:08:11 2005 From: phyliul at nus.edu.sg (Liu Lei) Date: Fri, 6 May 2005 11:08:11 +0800 Subject: [Pw_forum] compiling problems of espresso-2.1.3 on IBM-rs6000??? Message-ID: <353B84412D651A43BA886B3EDCDB8B9A076E13@MBOX03.stf.nus.edu.sg> Dear Eyvaz and all, Yes, but essl is supposed to have all the math lib functions. LIBS="-lessl -L/usr/lib -llapack" does not work on our machine, as there is no liblapack.a file in the folder. Is there any way to solve this problem? Thanks and best regards, LIU, LEI -----Original Message----- From: pw_forum-admin at pwscf.org [mailto:pw_forum-admin at pwscf.org] On Behalf Of Eyvaz Isaev Sent: Thursday, May 05, 2005 7:38 PM To: pw_forum at pwscf.org Subject: Re: [Pw_forum] compiling problems of espresso-2.1.3 on IBM-rs6000??? Hi Liu, It is a famous problem, and explained by Paolo why it happens. So, if you use LAPACK library ftom IBM, then put first -llapack flag. If you use MYLIB=blas_and_lapack then put $(LIBOBJS) before $(LIBS). I would like also say thanks to the Espresso team who managed to get a working Configure on IBM SP computers. Best regards, Eyvaz. --- Liu Lei wrote: > Dear all, > > > > I try to compile espresso-2.1.3 on IBM-rs6000, using > "./configure > --disable-parallel" > > > > > > And then I try example07. > > The scf and nscf with pw.x is ok, but ph.x refused > to work. > > Here is error message of al.ph.out > > " > > bash-2.05a$ more al.ph.out > > > > Program PHONON v.2.1.3 starts ... > > Today is 5May2005 at 16:11:29 > > > > Ultrasoft (Vanderbilt) Pseudopotentials > > > > Reading file al.save ... > > read complete > > > > Reading file al.save ... > > read complete > > > > nbndx = 6 nbnd = 6 natomwfc = > 9 npwx = 125 > > nelec = 3.00 nkb = 4 ngl = > 33 > > ** ON ENTRY TO ZHPEV PARAMETER NUMBER 1 HAD AN > ILLEGAL VALUE > > " > > Does anyone know what happened here, and help me > kindly? > > > > > > Regards, > > > > LIU, LEI > > > > > > Discover Yahoo! Stay in touch with email, IM, photo sharing and more. Check it out! http://discover.yahoo.com/stayintouch.html _______________________________________________ Pw_forum mailing list Pw_forum at pwscf.org http://www.democritos.it/mailman/listinfo/pw_forum From stefanostef at hotmail.com Fri May 6 09:37:23 2005 From: stefanostef at hotmail.com (Stefano Angioletti) Date: Fri, 06 May 2005 09:37:23 +0200 Subject: [Pw_forum] Ram.x Message-ID: I'm receivig this error message "k+b is not a k point" when trying to run ram.x for the calculation of the Raman tensor through the 2n+1 theorem, I tried to read the code to understand what it means but I wasn't able to. Is there anyone who can help me many thanks Stefano Angioletti Universita' di Milano Bicocca From g.ballabio at cineca.it Fri May 6 09:57:02 2005 From: g.ballabio at cineca.it (Gerardo Ballabio) Date: Fri, 6 May 2005 09:57:02 +0200 (MEST) Subject: [Pw_forum] compiling problems of espresso-2.1.3 on IBM-rs6000??? In-Reply-To: <353B84412D651A43BA886B3EDCDB8B9A076E13@MBOX03.stf.nus.edu.sg> (from phyliul@nus.edu.sg on Fri May 6 05:08:11 2005) References: <353B84412D651A43BA886B3EDCDB8B9A076E13@MBOX03.stf.nus.edu.sg> Message-ID: <1115366220l.4012l.0l@nb-ballabio.cineca.it> On 05/06/05 05:08:11, Liu Lei wrote: > Yes, but essl is supposed to have all the math lib functions. > LIBS="-lessl -L/usr/lib -llapack" does not work on our machine, as > there is no liblapack.a file in the folder. > > Is there any way to solve this problem? Yes, if lapack library is not installed on your machine, you can set "MYLIB = lapack" in the make.sys file after configuration (configure will probably set "MYLIB = blas_and_lapack", but if you do have essl, you don't need blas). Gerardo From jcconesa at icp.csic.es Fri May 6 14:28:41 2005 From: jcconesa at icp.csic.es (Jose C. Conesa) Date: Fri, 6 May 2005 14:28:41 +0200 Subject: [Pw_forum] problem with compilation of espresso in HP-UX Message-ID: <427B7F19.26975.696DABCA@localhost> Dear all, First of all, Axel Kohlmeyer's solution on the problem with the repeated 'rd_ht? definition was perfect. Compilation in the alpha machine is now OK. Many thanks. Secondly: I tried to compile espresso 2.1.3 also in a HP machine with Itanium2 processors and HP-UX. This architecture was not known to configure. Can someone suggest a closest one that I may try, or some other solution? All the best, Jose C. Conesa Instituto de Catalisis y Petroleoquimica, CSIC Campus de Cantoblanco 28049 Madrid - Spain Phone Nr. 34-91-5854766 Fax Nr. 34-91-5854760 From axel.kohlmeyer at theochem.ruhr-uni-bochum.de Fri May 6 14:52:34 2005 From: axel.kohlmeyer at theochem.ruhr-uni-bochum.de (Axel Kohlmeyer) Date: Fri, 6 May 2005 14:52:34 +0200 (CEST) Subject: [Pw_forum] problem with compilation of espresso in HP-UX In-Reply-To: <427B7F19.26975.696DABCA@localhost> Message-ID: On Fri, 6 May 2005, Jose C. Conesa wrote: dear jose, JC> Dear all, JC> First of all, Axel Kohlmeyer's solution on the problem with the repeated JC> 'rd_ht? definition was perfect. Compilation in the alpha machine is now JC> OK. Many thanks. you're welcome. i have a couple of those here in bochum (quite vintage hardware and running linux, though) and occasionally (ab)use the good ole dec fortran compiler as acid test for static code checking. so that one was easily spotted. JC> Secondly: I tried to compile espresso 2.1.3 also in a HP machine with JC> Itanium2 processors and HP-UX. This architecture was not known to JC> configure. Can someone suggest a closest one that I may try, or some JC> other solution? you are in for some real 'fun', eh? i don't have any of those in our backlot, but the following are some flags for that kind of config from a different QC-software package. you may want to import them into your make.sys if the default does not work or you suspect not getting the most out of the machine. CPP='/usr/ccs/lbin/cpp' FFLAGS='+Ofast +Odataprefetch +DSnative +U77 +DD64 +Onoopenmp +externals=equiv_file' LFLAGS='-Wl,-a,archive_shared +O3 +Oparallel +U77 +DD64 \ -L/opt/mlib/lib/hpux64 -lveclib -llapack -lm' also from the existing include files, using DFLAGS=-D__HP -D__HP64 -D__FFTW -D__USE_INTERNAL_FFTW seems like a reasonable choice. good luck, axel. JC> All the best, JC> Jose C. Conesa JC> Instituto de Catalisis y Petroleoquimica, CSIC JC> Campus de Cantoblanco JC> 28049 Madrid - Spain JC> Phone Nr. 34-91-5854766 JC> Fax Nr. 34-91-5854760 JC> JC> _______________________________________________ JC> Pw_forum mailing list JC> Pw_forum at pwscf.org JC> http://www.democritos.it/mailman/listinfo/pw_forum JC> JC> -- ======================================================================= Dr. Axel Kohlmeyer e-mail: axel.kohlmeyer at theochem.ruhr-uni-bochum.de Lehrstuhl fuer Theoretische Chemie Phone: ++49 (0)234/32-26673 Ruhr-Universitaet Bochum - NC 03/53 Fax: ++49 (0)234/32-14045 D-44780 Bochum http://www.theochem.ruhr-uni-bochum.de/~axel.kohlmeyer/ ======================================================================= If you make something idiot-proof, the universe creates a better idiot. From g.ballabio at cineca.it Fri May 6 15:07:01 2005 From: g.ballabio at cineca.it (Gerardo Ballabio) Date: Fri, 6 May 2005 15:07:01 +0200 (MEST) Subject: [Pw_forum] problem with compilation of espresso in HP-UX In-Reply-To: (from axel.kohlmeyer@theochem.ruhr-uni-bochum.de on Fri May 6 14:52:34 2005) References: Message-ID: <1115384820l.20971l.0l@nb-ballabio.cineca.it> On 05/06/05 14:52:34, Axel Kohlmeyer wrote: > JC> Secondly: I tried to compile espresso 2.1.3 also in a HP machine > with > JC> Itanium2 processors and HP-UX. This architecture was not known > to > JC> configure. Can someone suggest a closest one that I may try, or > some > JC> other solution? > > you are in for some real 'fun', eh? > i don't have any of those in our backlot, but the following > are some flags for that kind of config from a different > QC-software package. you may want to import them into your > make.sys if the default does not work or you suspect not > getting the most out of the machine. > > CPP='/usr/ccs/lbin/cpp' > FFLAGS='+Ofast +Odataprefetch +DSnative +U77 +DD64 +Onoopenmp > +externals=equiv_file' > LFLAGS='-Wl,-a,archive_shared +O3 +Oparallel +U77 +DD64 \ > -L/opt/mlib/lib/hpux64 -lveclib -llapack -lm' > > also from the existing include files, using > > DFLAGS=-D__HP -D__HP64 -D__FFTW -D__USE_INTERNAL_FFTW > > seems like a reasonable choice. If those work, please let us know. We'd be happy to add that platform to the next version of configure. Gerardo From xhongjun at mail.ustc.edu.cn Fri May 6 15:43:21 2005 From: xhongjun at mail.ustc.edu.cn (xianghjun) Date: Fri, 06 May 2005 21:43:21 +0800 Subject: [Pw_forum] problem with compilation of espresso in HP-UX In-Reply-To: <315382497.06350@ustc.edu.cn> References: <315382497.06350@ustc.edu.cn> Message-ID: <427B7479.5060109@mail.ustc.edu.cn> Jose C. Conesa wrote: >Dear all, >First of all, Axel Kohlmeyer's solution on the problem with the repeated >'rd_ht? definition was perfect. Compilation in the alpha machine is now >OK. Many thanks. >Secondly: I tried to compile espresso 2.1.3 also in a HP machine with >Itanium2 processors and HP-UX. This architecture was not known to >configure. Can someone suggest a closest one that I may try, or some >other solution? >All the best, >Jose C. Conesa >Instituto de Catalisis y Petroleoquimica, CSIC >Campus de Cantoblanco >28049 Madrid - Spain >Phone Nr. 34-91-5854766 >Fax Nr. 34-91-5854760 > >_______________________________________________ >Pw_forum mailing list >Pw_forum at pwscf.org >http://www.democritos.it/mailman/listinfo/pw_forum > > > Dear Conesa, I have successfully compiled PWSCF 2.1.2, here is my make.sys file. Hope it helps. Best regards, xianghjun ============================================================= H. J. Xiang Ph.D. Candidate, Hefei National Laboratory For Physical Sciences at Microscale, University of Science and Technology of China, Hefei, Anhui, 230026, People's Republic of China Tel.: 86-551-3606428 Fax.: 86-551-3602969 E-mail: xhongjun at mail.ustc.edu.cn ============================================================= -------------- next part -------------- An embedded and charset-unspecified text was scrubbed... Name: make.sys Url: /pipermail/attachments/20050506/f3def95e/attachment.txt From phyliul at nus.edu.sg Fri May 6 17:18:37 2005 From: phyliul at nus.edu.sg (Liu Lei) Date: Fri, 6 May 2005 23:18:37 +0800 Subject: [Pw_forum] compiling problems of espresso-2.1.3 onIBM-rs6000??? Message-ID: <353B84412D651A43BA886B3EDCDB8B9A06A75D@MBOX03.stf.nus.edu.sg> Dear Gerardo, Many thanks for your kind reply. I try set "MYLIB = lapack", but still got " ** ON ENTRY TO ZHPEV PARAMETER NUMBER 1 HAD AN ILLEGAL VALUE" From eyvaz_isaev at yahoo.com Fri May 6 17:33:40 2005 From: eyvaz_isaev at yahoo.com (Eyvaz Isaev) Date: Fri, 6 May 2005 08:33:40 -0700 (PDT) Subject: [Pw_forum] compiling problems of espresso-2.1.3 onIBM-rs6000??? In-Reply-To: 6667 Message-ID: <20050506153340.31648.qmail@web60312.mail.yahoo.com> Dear Liu, Yesterday I noticed that you have to put first MYLIB and then ESSL. I.e. LDFLAGS looks like LDFLAGS = -q64 $(LIBOBJS) $(LIBS) Probably you didn't change your make.sys. Bests, Eyvaz. --- Liu Lei wrote: > Dear Gerardo, > > Many thanks for your kind reply. > I try set "MYLIB = lapack", but still got " > ** ON ENTRY TO ZHPEV PARAMETER NUMBER 1 HAD AN > ILLEGAL VALUE" > > From archive searching results of Paolo's comments > "IBM with ESSL ? ESSL contains a version of ZHPEV > that is incompatible > with ZHPEV provided by LAPACK. If __AIX is defined, > the former is used. > Load ESSL before LAPACK. > Paolo > " > > I am very confused, that means I have to install a > liblapack.a > separately together with essl? > > > Thanks and regards, > > LIU, LEI > > > -----Original Message----- > From: pw_forum-admin at pwscf.org > [mailto:pw_forum-admin at pwscf.org] On > Behalf Of Gerardo Ballabio > Sent: Friday, May 06, 2005 3:57 PM > To: pw_forum at pwscf.org > Subject: Re: [Pw_forum] compiling problems of > espresso-2.1.3 > onIBM-rs6000??? > > On 05/06/05 05:08:11, Liu Lei wrote: > > Yes, but essl is supposed to have all the math lib > functions. > > LIBS="-lessl -L/usr/lib -llapack" does not work > on our machine, as > > there is no liblapack.a file in the folder. > > > > Is there any way to solve this problem? > > Yes, if lapack library is not installed on your > machine, you can set > "MYLIB = lapack" in the make.sys file after > configuration (configure > will probably set "MYLIB = blas_and_lapack", but if > you do have essl, > you don't need blas). > > Gerardo > > _______________________________________________ > Pw_forum mailing list > Pw_forum at pwscf.org > http://www.democritos.it/mailman/listinfo/pw_forum > _______________________________________________ > Pw_forum mailing list > Pw_forum at pwscf.org > http://www.democritos.it/mailman/listinfo/pw_forum > __________________________________________________ Do You Yahoo!? Tired of spam? Yahoo! Mail has the best spam protection around http://mail.yahoo.com From phyliul at nus.edu.sg Sat May 7 09:07:20 2005 From: phyliul at nus.edu.sg (Liu Lei) Date: Sat, 7 May 2005 15:07:20 +0800 Subject: [Pw_forum] compiling problems of espresso-2.1.3 onIBM-rs6000??? Message-ID: <353B84412D651A43BA886B3EDCDB8B9A076E17@MBOX03.stf.nus.edu.sg> Dear Eyvaz, :) I succeeded with LDFLAGS = -q64 $(LIBS) $(LIBOBJS) You could mistype the words. Many thanks and regards, LIU, LEI -----Original Message----- From: pw_forum-admin at pwscf.org [mailto:pw_forum-admin at pwscf.org] On Behalf Of Eyvaz Isaev Sent: Friday, May 06, 2005 11:34 PM To: pw_forum at pwscf.org Subject: RE: [Pw_forum] compiling problems of espresso-2.1.3 onIBM-rs6000??? Dear Liu, Yesterday I noticed that you have to put first MYLIB and then ESSL. I.e. LDFLAGS looks like LDFLAGS = -q64 $(LIBOBJS) $(LIBS) Probably you didn't change your make.sys. Bests, Eyvaz. --- Liu Lei wrote: > Dear Gerardo, > > Many thanks for your kind reply. > I try set "MYLIB = lapack", but still got " > ** ON ENTRY TO ZHPEV PARAMETER NUMBER 1 HAD AN > ILLEGAL VALUE" > > From archive searching results of Paolo's comments > "IBM with ESSL ? ESSL contains a version of ZHPEV > that is incompatible > with ZHPEV provided by LAPACK. If __AIX is defined, > the former is used. > Load ESSL before LAPACK. > Paolo > " > > I am very confused, that means I have to install a > liblapack.a > separately together with essl? > > > Thanks and regards, > > LIU, LEI > > > -----Original Message----- > From: pw_forum-admin at pwscf.org > [mailto:pw_forum-admin at pwscf.org] On > Behalf Of Gerardo Ballabio > Sent: Friday, May 06, 2005 3:57 PM > To: pw_forum at pwscf.org > Subject: Re: [Pw_forum] compiling problems of > espresso-2.1.3 > onIBM-rs6000??? > > On 05/06/05 05:08:11, Liu Lei wrote: > > Yes, but essl is supposed to have all the math lib > functions. > > LIBS="-lessl -L/usr/lib -llapack" does not work > on our machine, as > > there is no liblapack.a file in the folder. > > > > Is there any way to solve this problem? > > Yes, if lapack library is not installed on your > machine, you can set > "MYLIB = lapack" in the make.sys file after > configuration (configure > will probably set "MYLIB = blas_and_lapack", but if > you do have essl, > you don't need blas). > > Gerardo > > _______________________________________________ > Pw_forum mailing list > Pw_forum at pwscf.org > http://www.democritos.it/mailman/listinfo/pw_forum > _______________________________________________ > Pw_forum mailing list > Pw_forum at pwscf.org > http://www.democritos.it/mailman/listinfo/pw_forum > __________________________________________________ Do You Yahoo!? Tired of spam? Yahoo! Mail has the best spam protection around http://mail.yahoo.com _______________________________________________ Pw_forum mailing list Pw_forum at pwscf.org http://www.democritos.it/mailman/listinfo/pw_forum From eyvaz_isaev at yahoo.com Sat May 7 21:30:57 2005 From: eyvaz_isaev at yahoo.com (Eyvaz Isaev) Date: Sat, 7 May 2005 12:30:57 -0700 (PDT) Subject: [Pw_forum] compiling problems of espresso-2.1.3 onIBM-rs6000??? In-Reply-To: 6667 Message-ID: <20050507193057.76574.qmail@web60319.mail.yahoo.com> Dear Liu, Congratulations! There was no mistype on LDFLAGS I mentioned before. Actually it was used on IBM-SP supercomputer. Happy espresso, Eyvaz. --- Liu Lei wrote: > Dear Eyvaz, > > :) > > I succeeded with > LDFLAGS = -q64 $(LIBS) $(LIBOBJS) > > You could mistype the words. > > Many thanks and regards, > > LIU, LEI > > > > > > > -----Original Message----- > From: pw_forum-admin at pwscf.org > [mailto:pw_forum-admin at pwscf.org] On > Behalf Of Eyvaz Isaev > Sent: Friday, May 06, 2005 11:34 PM > To: pw_forum at pwscf.org > Subject: RE: [Pw_forum] compiling problems of > espresso-2.1.3 > onIBM-rs6000??? > > Dear Liu, > > Yesterday I noticed that you have to put first > MYLIB and then ESSL. I.e. LDFLAGS looks like > > LDFLAGS = -q64 $(LIBOBJS) $(LIBS) > > Probably you didn't change your make.sys. > > Bests, > Eyvaz. > > > --- Liu Lei wrote: > > Dear Gerardo, > > > > Many thanks for your kind reply. > > I try set "MYLIB = lapack", but still got " > > ** ON ENTRY TO ZHPEV PARAMETER NUMBER 1 HAD AN > > ILLEGAL VALUE" > > > > From archive searching results of Paolo's comments > > "IBM with ESSL ? ESSL contains a version of ZHPEV > > that is incompatible > > with ZHPEV provided by LAPACK. If __AIX is > defined, > > the former is used. > > Load ESSL before LAPACK. > > Paolo > > " > > > > I am very confused, that means I have to install a > > liblapack.a > > separately together with essl? > > > > > > Thanks and regards, > > > > LIU, LEI > > > > > > -----Original Message----- > > From: pw_forum-admin at pwscf.org > > [mailto:pw_forum-admin at pwscf.org] On > > Behalf Of Gerardo Ballabio > > Sent: Friday, May 06, 2005 3:57 PM > > To: pw_forum at pwscf.org > > Subject: Re: [Pw_forum] compiling problems of > > espresso-2.1.3 > > onIBM-rs6000??? > > > > On 05/06/05 05:08:11, Liu Lei wrote: > > > Yes, but essl is supposed to have all the math > lib > > functions. > > > LIBS="-lessl -L/usr/lib -llapack" does not work > > on our machine, as > > > there is no liblapack.a file in the folder. > > > > > > Is there any way to solve this problem? > > > > Yes, if lapack library is not installed on your > > machine, you can set > > "MYLIB = lapack" in the make.sys file after > > configuration (configure > > will probably set "MYLIB = blas_and_lapack", but > if > > you do have essl, > > you don't need blas). > > > > Gerardo > > > > _______________________________________________ > > Pw_forum mailing list > > Pw_forum at pwscf.org > > http://www.democritos.it/mailman/listinfo/pw_forum > > _______________________________________________ > > Pw_forum mailing list > > Pw_forum at pwscf.org > > http://www.democritos.it/mailman/listinfo/pw_forum > > > > __________________________________________________ > Do You Yahoo!? > Tired of spam? Yahoo! Mail has the best spam > protection around > http://mail.yahoo.com > _______________________________________________ > Pw_forum mailing list > Pw_forum at pwscf.org > http://www.democritos.it/mailman/listinfo/pw_forum > _______________________________________________ > Pw_forum mailing list > Pw_forum at pwscf.org > http://www.democritos.it/mailman/listinfo/pw_forum > Yahoo! Mail Stay connected, organized, and protected. Take the tour: http://tour.mail.yahoo.com/mailtour.html From rjxiao at blem.ac.cn Sun May 8 05:30:58 2005 From: rjxiao at blem.ac.cn (rjxiao) Date: Sun, 8 May 2005 11:30:58 +0800 Subject: [Pw_forum] About spilling parameter Message-ID: <20050508113058.a2ba26b2@server.blem.ac.cn> Dear users: When I use the projwfc.x to calculate the DOS,I get the spilling parameter=0.4349. But I found that many letters in this forum shows spilling parameter less than 0.01. Does it mean that I got a wrong result? If the spilling parameter is not right, does it mean the calculated band structure and DOS and other properties all not correct? And what has relationship with spilling parameter? How can I make the calculation correct? I am looking forward to your reply.Thank you very much. Best regards, Sincerely, Ruijuan Xiao From wjyin at fudan.edu.cn Sun May 8 09:42:12 2005 From: wjyin at fudan.edu.cn (wjyin at fudan.edu.cn) Date: Sun, 08 May 2005 15:42:12 +0800 Subject: [Pw_forum] Two problems for pseuodopotential choosing Message-ID: <3a96a103a932e9.3a932e93a96a10@fudan.edu.cn> Dear all, I have encountered problems about pseudopotential. One is, I just want to use the well-know simple BHS pseuodopotential which parameters is directly given by Bachelet,Hamann and Schluter in 1982, rather than ones generated by all-electron calculation again. Could any pseudopotential generation software generate this simple BHS psp just from the given parameters in 1982 which could also be used by PWSCF. The other is, Is there any input parameter which determins the maximum angle momentum for used pseudopotential. For a simple example, I just want to use l=0 pseudopotential for all valence electrons calculation. Your help will be greatly appreciated! Yin Wanjian From axel.kohlmeyer at theochem.ruhr-uni-bochum.de Sun May 8 11:55:02 2005 From: axel.kohlmeyer at theochem.ruhr-uni-bochum.de (Axel Kohlmeyer) Date: Sun, 8 May 2005 11:55:02 +0200 (CEST) Subject: [Pw_forum] Two problems for pseuodopotential choosing In-Reply-To: <3a96a103a932e9.3a932e93a96a10@fudan.edu.cn> Message-ID: On Sun, 8 May 2005 wjyin at fudan.edu.cn wrote: YW> Dear all, dear yin wanjian, YW> I have encountered problems about pseudopotential. YW> YW> One is, YW> I just want to use the well-know simple BHS pseuodopotential which YW> parameters is directly given by Bachelet,Hamann and Schluter in 1982, YW> rather than ones generated by all-electron calculation again. YW> Could any pseudopotential generation software generate this simple YW> BHS psp just from the given parameters in 1982 which could also be YW> used by PWSCF. the strategy for getting BHS potentials into pwscf would be to turn the potential parameters into a numerical potential. please have a look at the espresso sourcecode. in upftools/ncpp2upf.f90 around line 100-140 you'll find evidence, that this converter supports BHS potentials in a specific format (the old pwscf format). so you could either hack this converter to read the BHS parameters from the console or create potential files conforming to this format so you can convert them into UPF format. YW> The other is, YW> Is there any input parameter which determins the maximum angle YW> momentum for used pseudopotential. For a simple example, I just want YW> to use l=0 pseudopotential for all valence electrons calculation. do i understand you correctly, that you want to use a fully local pseudopotential? i am not aware of a flag that allows to set that, but you could follow a similar route as outlined above. simply copy the l=0 potential for all angular momentum, you'd want to include and then convert to UPF format. best regards, axel. YW> YW> Your help will be greatly appreciated! YW> YW> Yin Wanjian YW> YW> _______________________________________________ YW> Pw_forum mailing list YW> Pw_forum at pwscf.org YW> http://www.democritos.it/mailman/listinfo/pw_forum YW> YW> -- ======================================================================= Dr. Axel Kohlmeyer e-mail: axel.kohlmeyer at theochem.ruhr-uni-bochum.de Lehrstuhl fuer Theoretische Chemie Phone: ++49 (0)234/32-26673 Ruhr-Universitaet Bochum - NC 03/53 Fax: ++49 (0)234/32-14045 D-44780 Bochum http://www.theochem.ruhr-uni-bochum.de/~axel.kohlmeyer/ ======================================================================= If you make something idiot-proof, the universe creates a better idiot. From axel.kohlmeyer at theochem.ruhr-uni-bochum.de Sun May 8 12:19:04 2005 From: axel.kohlmeyer at theochem.ruhr-uni-bochum.de (Axel Kohlmeyer) Date: Sun, 8 May 2005 12:19:04 +0200 (CEST) Subject: [Pw_forum] Doubt on pseudopotential In-Reply-To: Message-ID: On Wed, 4 May 2005, Eduardo Ariel Menendez P wrote: dear eduardo, [...] EM> Several elements of the 6th row have 4f elBectrons. Hence, I think that EM> the EM> valence wavefunctions calculated with plane waves should be orthogonal to EM> the core 4f orbitals, and an l=3 channel must be included in the EM> pseudopotential (otherwise it is the local part). See, for instance, the EM> Pb pseudopotential [..] EM> with the core 4F orbitals. I also checks Tl, Au,Ta, and it is the same. EM> For this lack of an F channel there is surely a good reason. EM> Can someone explain me that reason, please? i have not created those potentials, so i don't know for sure, but most likely the f-channel was left out, because it had little effect. the 4f-orbitals are very close to the core, so for elements with the 4f orbitals filled, there is little effect from them apart from a 'contraction' of the other orbitals. thus chemically, many elements from the 6th row are very similar to their counterparts in the 5th row. there are a exceptions, though... a similar situation exists e.g., for the 3d states. please see the section 'Choosing the valence-core partition' in the pseudo-gen.tex document in the atomic_doc directory of the espresso packages. best regards, axel. EM> EM> EM> Best regards EM> Eduardo EM> EM> Eduardo A. Menendez Proupin EM> Department of Physics EM> Faculty of Science EM> University of Chile EM> Las Palmeras 3425 EM> ?u?oa, Santiago EM> Chile EM> Phone: 56+2+678 74 11 EM> http://fisica.ciencias.uchile.cl/~emenendez/ EM> _______________________________________________ EM> Pw_forum mailing list EM> Pw_forum at pwscf.org EM> http://www.democritos.it/mailman/listinfo/pw_forum EM> EM> -- ======================================================================= Dr. Axel Kohlmeyer e-mail: axel.kohlmeyer at theochem.ruhr-uni-bochum.de Lehrstuhl fuer Theoretische Chemie Phone: ++49 (0)234/32-26673 Ruhr-Universitaet Bochum - NC 03/53 Fax: ++49 (0)234/32-14045 D-44780 Bochum http://www.theochem.ruhr-uni-bochum.de/~axel.kohlmeyer/ ======================================================================= If you make something idiot-proof, the universe creates a better idiot. From wjyin at fudan.edu.cn Sun May 8 14:06:30 2005 From: wjyin at fudan.edu.cn (wjyin at fudan.edu.cn) Date: Sun, 08 May 2005 20:06:30 +0800 Subject: =?gb2312?B?u9i4tA==?=:Re: [Pw_forum] Two problems for pseuodopotential choosing Message-ID: <3af20063aee7c8.3aee7c83af2006@fudan.edu.cn> Dear Axel, Thanks for your useful help. My second question could not be presented clearly. When sovling Kohn-Sham equation by plane-wave pseudopotential method , we deal different valence pseudowave of momentum l=0,1,2... with different non-local l-dependent pseudopotential. Thus is illustrated in 220-221, Part III, <>(by Richard M.Martin). As approximation, we are not necessary using large l pseudopotential. Could I set this maximum l in PWSCF . or it could be decided in pseudopotential generation. best wishes Yin Wanjian ----- ??? ----- ?: Axel Kohlmeyer ??: ???, ?? 8?, 2005 ??5:55 ??: Re: [Pw_forum] Two problems for pseuodopotential choosing > > On Sun, 8 May 2005 wjyin at fudan.edu.cn wrote: > > YW> Dear all, > > dear yin wanjian, > > YW> I have encountered problems about pseudopotential. > YW> > YW> One is, > YW> I just want to use the well-know simple BHS > pseuodopotential which > YW> parameters is directly given by Bachelet,Hamann and Schluter > in 1982, > YW> rather than ones generated by all-electron calculation again. > YW> Could any pseudopotential generation software generate this > simple > YW> BHS psp just from the given parameters in 1982 which could > also be > YW> used by PWSCF. > > the strategy for getting BHS potentials into pwscf would be to > turn the potential parameters into a numerical potential. > please have a look at the espresso sourcecode. > in upftools/ncpp2upf.f90 around line 100-140 you'll find evidence, > that this converter supports BHS potentials in a specific format > (the old pwscf format). > so you could either hack this converter to read the BHS parameters > fromthe console or create potential files conforming to this > format so you > can convert them into UPF format. > > YW> The other is, > YW> Is there any input parameter which determins the maximum > angle > YW> momentum for used pseudopotential. For a simple example, I > just want > YW> to use l=0 pseudopotential for all valence electrons calculation. > > do i understand you correctly, that you want to use a fully local > pseudopotential? i am not aware of a flag that allows to set that, > but you could follow a similar route as outlined above. simply > copy the l=0 potential for all angular momentum, you'd want > to include and then convert to UPF format. > > best regards, > axel. > YW> > YW> Your help will be greatly appreciated! > YW> > YW> Yin Wanjian > YW> > YW> _______________________________________________ > YW> Pw_forum mailing list > YW> Pw_forum at pwscf.org > YW> http://www.democritos.it/mailman/listinfo/pw_forum > YW> > YW> > > -- > > ======================================================================= > Dr. Axel Kohlmeyer e-mail: axel.kohlmeyer at theochem.ruhr-uni- > bochum.deLehrstuhl fuer Theoretische Chemie Phone: ++49 > (0)234/32-26673 > Ruhr-Universitaet Bochum - NC 03/53 Fax: ++49 (0)234/32- > 14045D-44780 Bochum http://www.theochem.ruhr-uni- > bochum.de/~axel.kohlmeyer/============================================= ========================== > If you make something idiot-proof, the universe creates a better > idiot. > _______________________________________________ > Pw_forum mailing list > Pw_forum at pwscf.org > http://www.democritos.it/mailman/listinfo/pw_forum > From axel.kohlmeyer at theochem.ruhr-uni-bochum.de Sun May 8 14:31:52 2005 From: axel.kohlmeyer at theochem.ruhr-uni-bochum.de (Axel Kohlmeyer) Date: Sun, 8 May 2005 14:31:52 +0200 (CEST) Subject: =?gb2312?B?u9i4tA==?=:Re: [Pw_forum] Two problems for pseuodopotential choosing In-Reply-To: <3af20063aee7c8.3aee7c83af2006@fudan.edu.cn> Message-ID: On Sun, 8 May 2005 wjyin at fudan.edu.cn wrote: dear yin winjian, YW> Dear Axel, YW> Thanks for your useful help. YW> My second question could not be presented clearly. YW> YW> When sovling Kohn-Sham equation by plane-wave pseudopotential YW> method , we YW> deal different valence pseudowave of momentum l=0,1,2... with YW> different YW> non-local l-dependent pseudopotential. Thus is illustrated in 220-221, YW> Part YW> III, <>(by Richard M.Martin). YW> YW> As approximation, we are not necessary using large l YW> pseudopotential. YW> Could I set this maximum l in PWSCF . or it could be decided in YW> pseudopotential YW> generation. to the best of my knowledge, there is no such option in pwscf. the maximum l for each pseudopotential is encoded in the UPF file, though. please see the file upftools/UPF. best regards, axel. YW> YW> best wishes YW> Yin Wanjian YW> YW> YW> ----- ?????? ----- YW> ??: Axel Kohlmeyer YW> ????: ??????, ???? 8??, 2005 ????5:55 YW> ????: Re: [Pw_forum] Two problems for pseuodopotential choosing YW> YW> > YW> > On Sun, 8 May 2005 wjyin at fudan.edu.cn wrote: YW> > YW> > YW> Dear all, YW> > YW> > dear yin wanjian, YW> > YW> > YW> I have encountered problems about pseudopotential. YW> > YW> YW> > YW> One is, YW> > YW> I just want to use the well-know simple BHS YW> > pseuodopotential which YW> > YW> parameters is directly given by Bachelet,Hamann and Schluter YW> > in 1982, YW> > YW> rather than ones generated by all-electron calculation again. YW> > YW> Could any pseudopotential generation software generate this YW> > simple YW> > YW> BHS psp just from the given parameters in 1982 which could YW> > also be YW> > YW> used by PWSCF. YW> > YW> > the strategy for getting BHS potentials into pwscf would be to YW> > turn the potential parameters into a numerical potential. YW> > please have a look at the espresso sourcecode. YW> > in upftools/ncpp2upf.f90 around line 100-140 you'll find evidence, YW> > that this converter supports BHS potentials in a specific format YW> > (the old pwscf format). YW> > so you could either hack this converter to read the BHS parameters YW> > fromthe console or create potential files conforming to this YW> > format so you YW> > can convert them into UPF format. YW> > YW> > YW> The other is, YW> > YW> Is there any input parameter which determins the maximum YW> > angle YW> > YW> momentum for used pseudopotential. For a simple example, I YW> > just want YW> > YW> to use l=0 pseudopotential for all valence electrons calculation. YW> > YW> > do i understand you correctly, that you want to use a fully local YW> > pseudopotential? i am not aware of a flag that allows to set that, YW> > but you could follow a similar route as outlined above. simply YW> > copy the l=0 potential for all angular momentum, you'd want YW> > to include and then convert to UPF format. YW> > YW> > best regards, YW> > axel. YW> > YW> YW> > YW> Your help will be greatly appreciated! YW> > YW> YW> > YW> Yin Wanjian YW> > YW> YW> > YW> _______________________________________________ YW> > YW> Pw_forum mailing list YW> > YW> Pw_forum at pwscf.org YW> > YW> http://www.democritos.it/mailman/listinfo/pw_forum YW> > YW> YW> > YW> YW> > YW> > -- YW> > YW> > YW> ======================================================================= YW> > Dr. Axel Kohlmeyer e-mail: axel.kohlmeyer at theochem.ruhr-uni- YW> > bochum.deLehrstuhl fuer Theoretische Chemie Phone: ++49 YW> > (0)234/32-26673 YW> > Ruhr-Universitaet Bochum - NC 03/53 Fax: ++49 (0)234/32- YW> > 14045D-44780 Bochum http://www.theochem.ruhr-uni- YW> > YW> bochum.de/~axel.kohlmeyer/============================================= YW> ========================== YW> > If you make something idiot-proof, the universe creates a better YW> > idiot. YW> > _______________________________________________ YW> > Pw_forum mailing list YW> > Pw_forum at pwscf.org YW> > http://www.democritos.it/mailman/listinfo/pw_forum YW> > YW> _______________________________________________ YW> Pw_forum mailing list YW> Pw_forum at pwscf.org YW> http://www.democritos.it/mailman/listinfo/pw_forum YW> YW> -- ======================================================================= Dr. Axel Kohlmeyer e-mail: axel.kohlmeyer at theochem.ruhr-uni-bochum.de Lehrstuhl fuer Theoretische Chemie Phone: ++49 (0)234/32-26673 Ruhr-Universitaet Bochum - NC 03/53 Fax: ++49 (0)234/32-14045 D-44780 Bochum http://www.theochem.ruhr-uni-bochum.de/~axel.kohlmeyer/ ======================================================================= If you make something idiot-proof, the universe creates a better idiot. From degironc at sissa.it Mon May 9 09:26:32 2005 From: degironc at sissa.it (Stefano de Gironcoli) Date: Mon, 09 May 2005 09:26:32 +0200 Subject: [Pw_forum] About spilling parameter References: <20050508113058.a2ba26b2@server.blem.ac.cn> Message-ID: <427F10A8.9030202@sissa.it> The s;pilling parameter is a measure of how well the occupied electron manifold superposes to the one spanned by the atomic wavefunctions, used to build the projected density of states. The smaller it is the better is the superposition. If the spilling parameter is large this means that your crystal wavefunctions are rather different from superposition of atomic wavefunctions. Usually it is the case but there could be exceptions. Check whether the atomic wfc in the pseudopotential file are reasonable. Check your crystal structure, was it relaxed ? Spilling parameter tells something about the atomic-wfc--projected DOS, other properties should be OK (if the structure is OK). Stefano de Girocoli rjxiao wrote: >Dear users: > >When I use the projwfc.x to calculate the DOS,I get the spilling parameter=0.4349. But I found that many letters in this forum shows spilling parameter less than 0.01. Does it mean that I got a wrong result? If the spilling parameter is not right, does it mean the calculated band structure and DOS and other properties all not correct? And what has relationship with spilling parameter? How can I make the calculation correct? > >I am looking forward to your reply.Thank you very much. > >Best regards, > >Sincerely, >Ruijuan Xiao > >_______________________________________________ >Pw_forum mailing list >Pw_forum at pwscf.org >http://www.democritos.it/mailman/listinfo/pw_forum > > From degironc at sissa.it Mon May 9 09:36:29 2005 From: degironc at sissa.it (Stefano de Gironcoli) Date: Mon, 09 May 2005 09:36:29 +0200 Subject: [Pw_forum] Two problems for pseuodopotential choosing References: <3a96a103a932e9.3a932e93a96a10@fudan.edu.cn> Message-ID: <427F12FD.3010608@sissa.it> In a non-local pseudopotential in the KB form (the one used by ESPRESSO codes) the angular momentum dependent part of the PP is described in term of projectors. Each projector carries an angular momentum label to which it applies. If you want to generate a local pseudopotential you can do it using zero projectors. An example of such local pseudopotentials are H.blyp-vbc.UPF and H.pz-vbc.UPF in http://www.pwscf.net/pseudo.htm However, reasonably accurate local pseudopotentials can be obtained for very few elements. stefano de Gironcoli wjyin at fudan.edu.cn wrote: > The other is, > Is there any input parameter which determins the maximum angle >momentum for used pseudopotential. For a simple example, I just want >to use l=0 pseudopotential for all valence electrons calculation. > > > From zhupwscf at yahoo.com.cn Mon May 9 10:18:06 2005 From: zhupwscf at yahoo.com.cn (=?gb2312?q?=C1=D9=20=D7=A1?=) Date: Mon, 9 May 2005 16:18:06 +0800 (CST) Subject: [Pw_forum] error-but nothing In-Reply-To: 6667 Message-ID: <20050509081806.15610.qmail@web15509.mail.cnb.yahoo.com> Dear Dr. : I have attached the input,output and the error files of the TiC in the affix as following: The output file of TiC: *************************************************************** .Program PWSCF v.2.1.3 starts ... Today is 27Apr2005 at 21: 8:32 Ultrasoft (Vanderbilt) Pseudopotentials Current dimensions of program pwscf are: ntypx =10 npk =40000 lmax = 3 nchix = 6 ndmx = 2000 nbrx =14 nqfx = 8 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% from read_namelists : error # 136 reading namelist control %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% stopping ... ********************************************************************************* The input file of TiC: ************************************************************************************ &CONTROL title = TiC , calculation = 'vc-relax' , restart_mode = 'from_scratch' , outdir = '/home/zul2/Tic-pwscf/' , pseudo_dir = '/home/zul2/pwscf/fhi98PP/bin/Elements/Ham/' , / &SYSTEM ibrav = 2, A = 4 , B = 4 , C = 4 , cosAB = 0 , cosAC = 0 , cosBC = 0 , nat = 2, ntyp = 2, ecutwfc = 20 , ecutrho = 60 , nspin = 2 , starting_magnetization(1) = 0, starting_magnetization(2) = 0, / &ELECTRONS electron_maxstep = 100, / &IONS / &CELL / ATOMIC_SPECIES Ti 22.00000 22-Ti:h.ini C 6.00000 06-C:h.ini ATOMIC_POSITIONS crystal Ti 0.000000000 0.000000000 0.000000000 C 0.500000000 0.500000000 0.500000000 K_POINTS gamma *********************************************************************************** Eyvaz Isaev ??: Dear Zhu, There is a "nearsightseeing" principle in condensed matter physics. According to this principle I don't see your output file, therefore, I do not feel (or see) an error. Bests, Eyvaz. --- ?? ?#1038; wrote: > Dear Eyvaz: > I'm grateful to you for helping me. > There is not pseudopotential for Co atom > except for fhi98pp pseudopotential of Co atom. The > output file said nothing but just error 136, > > Best regards! > Yours sincerely, > L.Zhu > > Eyvaz Isaev ?#1169;?#1040;: > Hello, > > It means that it does not depend on PsP, at least. > I suggest, nobody will be able to say something > until you send your ouput file. > > Bests, > Eyvaz. > > --- ?#1118;? ?#8470;#1038; > wrote: > > Dear everyone: > > I'm a new user of pwscf, I use the fhi98pp > > pseudopotential ,but there is an error 136, and > say > > nothing, I user other pseudopotential ,it's the > > same error. I don't know what's wrong. > > > > > > Best regards! > > > > > > > > > > --------------------------------- > > Do You Yahoo!? > > > ?#8470;#1118;#1030;?#1058;??#1038;#1029;?#1065;?#1169;?#1041;?#1081;?#1025;?#1062;??#1044;?#1110;??#1118;??#1059;?#1057;?#1079;?? > > __________________________________________________ > Do You Yahoo!? > Tired of spam? Yahoo! Mail has the best spam > protection around > http://mail.yahoo.com > _______________________________________________ > Pw_forum mailing list > Pw_forum at pwscf.org > http://www.democritos.it/mailman/listinfo/pw_forum > > > > --------------------------------- > Do You Yahoo!? > ?#1118;#1030;???#1029;???#1041;???#1062;??#1044;???#1118;???#1057;?#1079;?? __________________________________________________ Do You Yahoo!? Tired of spam? Yahoo! Mail has the best spam protection around http://mail.yahoo.com _______________________________________________ Pw_forum mailing list Pw_forum at pwscf.org http://www.democritos.it/mailman/listinfo/pw_forum --------------------------------- Do You Yahoo!? ??????????????? -------------- next part -------------- An HTML attachment was scrubbed... URL: /pipermail/attachments/20050509/a6c0a8f1/attachment.htm From giannozz at nest.sns.it Mon May 9 12:25:38 2005 From: giannozz at nest.sns.it (Paolo Giannozzi) Date: Mon, 9 May 2005 10:25:38 +0000 Subject: [Pw_forum] error-but nothing In-Reply-To: <20050503143624.71379.qmail@web15510.mail.cnb.yahoo.com> References: <20050503143624.71379.qmail@web15510.mail.cnb.yahoo.com> Message-ID: <200505091025.38897.giannozz@nest.sns.it> On Tuesday 03 May 2005 14:36, ? ? wrote: > There is not pseudopotential for Co atom there are two Co PP on the pwscf web site: what is wrong with those? > The output file said nothing but just error 136 the output file of what code ? -- Paolo Giannozzi e-mail: giannozz at nest.sns.it Scuola Normale Superiore Phone: +39/050-509876, Fax:-563513 Piazza dei Cavalieri 7 I-56126 Pisa, Italy From degironc at sissa.it Mon May 9 11:05:27 2005 From: degironc at sissa.it (Stefano de Gironcoli) Date: Mon, 09 May 2005 11:05:27 +0200 Subject: [Pw_forum] error-but nothing References: <20050509081806.15610.qmail@web15509.mail.cnb.yahoo.com> Message-ID: <427F27D7.2050906@sissa.it> It is not correct to say that you get an error without explanation. The code says it stops while reading the CONTROL namelist Indeed the title variable in this namelist is a character variable and its value should therefore be delimited by quotes (the same as outdir and pseudo_dir) Stefano de Gironcoli ? ? wrote: > Dear Dr. : > I have attached the input,output and the error files of the TiC in the > affix as following: > The output file of TiC: > *************************************************************** > .Program PWSCF v.2.1.3 starts ... > Today is 27Apr2005 at 21: 8:32 > Ultrasoft (Vanderbilt) Pseudopotentials > Current dimensions of program pwscf are: > ntypx =10 npk =40000 lmax = 3 > nchix = 6 ndmx = 2000 nbrx =14 nqfx = 8 > %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% > from read_namelists : error # 136 > reading namelist control > %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% > stopping ... > ********************************************************************************* > The input file of TiC: > ************************************************************************************ > &CONTROL > title = TiC , > calculation = 'vc-relax' , > restart_mode = 'from_scratch' , > outdir = '/home/zul2/Tic-pwscf/' , > pseudo_dir = '/home/zul2/pwscf/fhi98PP/bin/Elements/Ham/' , > / > &SYSTEM > ibrav = 2, > A = 4 , > B = 4 , > C = 4 , > cosAB = 0 , > cosAC = 0 , > cosBC = 0 , > nat = 2, > ntyp = 2, > ecutwfc = 20 , > ecutrho = 60 , > nspin = 2 , > starting_magnetization(1) = 0, > starting_magnetization(2) = 0, > / > &ELECTRONS > electron_maxstep = 100, > / > &IONS > / > &CELL > / > ATOMIC_SPECIES > Ti 22.00000 22-Ti:h.ini > C 6.00000 06-C:h.ini > ATOMIC_POSITIONS crystal > Ti 0.000000000 0.000000000 0.000000000 > C 0.500000000 0.500000000 0.500000000 > K_POINTS gamma > *********************************************************************************** From eyvaz_isaev at yahoo.com Mon May 9 11:13:09 2005 From: eyvaz_isaev at yahoo.com (Eyvaz Isaev) Date: Mon, 9 May 2005 02:13:09 -0700 (PDT) Subject: [Pw_forum] error-but nothing In-Reply-To: <20050509081806.15610.qmail@web15509.mail.cnb.yahoo.com> Message-ID: <20050509091309.41198.qmail@web60316.mail.yahoo.com> Hi, More likely, you start a job on IBM SP. If so, it is a known error, and you should edit your input file according &CONTROL ... ... &end and etc. Bests, Eyvaz. --- ?? ?? wrote: > Dear Dr. : > I have attached the input,output and the > error files of the TiC in the affix as following: > > The output file of TiC: > *************************************************************** > .Program PWSCF v.2.1.3 starts ... > Today is 27Apr2005 at 21: 8:32 > Ultrasoft (Vanderbilt) Pseudopotentials > Current dimensions of program pwscf are: > ntypx =10 npk =40000 lmax = 3 > nchix = 6 ndmx = 2000 nbrx =14 nqfx = 8 > > %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% > from read_namelists : error # 136 > reading namelist control > > %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% > stopping ... > ********************************************************************************* > > The input file of TiC: > ************************************************************************************ > &CONTROL > title = TiC , > calculation = 'vc-relax' , > restart_mode = 'from_scratch' , > outdir = > '/home/zul2/Tic-pwscf/' , > pseudo_dir = > '/home/zul2/pwscf/fhi98PP/bin/Elements/Ham/' , > / > &SYSTEM > ibrav = 2, > A = 4 , > B = 4 , > C = 4 , > cosAB = 0 , > cosAC = 0 , > cosBC = 0 , > nat = 2, > ntyp = 2, > ecutwfc = 20 , > ecutrho = 60 , > nspin = 2 , > starting_magnetization(1) = 0, > starting_magnetization(2) = 0, > / > &ELECTRONS > electron_maxstep = 100, > / > &IONS > / > &CELL > / > ATOMIC_SPECIES > Ti 22.00000 22-Ti:h.ini > C 6.00000 06-C:h.ini > ATOMIC_POSITIONS crystal > Ti 0.000000000 0.000000000 0.000000000 > > C 0.500000000 0.500000000 0.500000000 > > K_POINTS gamma > *********************************************************************************** > > > Eyvaz Isaev ????: > Dear Zhu, > > There is a "nearsightseeing" principle in condensed > matter physics. According to this principle I don't > see your output file, therefore, I do not feel (or > see) an error. > > Bests, > Eyvaz. > > > --- ???? ??#1038; > wrote: > > Dear Eyvaz: > > I'm grateful to you for helping me. > > There is not pseudopotential for Co atom > > except for fhi98pp pseudopotential of Co atom. The > > output file said nothing but just error 136, > > > > Best regards! > > Yours sincerely, > > L.Zhu > > > > Eyvaz Isaev > ??#1169;?#1040;: > > Hello, > > > > It means that it does not depend on PsP, at least. > > > I suggest, nobody will be able to say something > > until you send your ouput file. > > > > Bests, > > Eyvaz. > > > > --- ?#1118;?? ?#8470;#1038; > > wrote: > > > Dear everyone: > > > I'm a new user of pwscf, I use the fhi98pp > > > pseudopotential ,but there is an error 136, and > > say > > > nothing, I user other pseudopotential ,it's the > > > same error. I don't know what's wrong. > > > > > > > > > Best regards! > > > > > > > > > > > > > > > --------------------------------- > > > Do You Yahoo!? > > > > > > ?#8470;#1118;#1030;?#1058;???#1038;#1029;?#1065;?#1169;?#1041;?#1081;?#1025;?#1062;???#1044;?#1110;???#1118;???#1059;?#1057;?#1079;???? > > > > __________________________________________________ > > Do You Yahoo!? > > Tired of spam? Yahoo! Mail has the best spam > > protection around > > http://mail.yahoo.com > > _______________________________________________ > > Pw_forum mailing list > > Pw_forum at pwscf.org > > http://www.democritos.it/mailman/listinfo/pw_forum > > > > > > > > --------------------------------- > > Do You Yahoo!? > > > ??#1118;#1030;??????#1029;?????#1041;?????#1062;???#1044;?????#1118;?????#1057;?#1079;???? > > __________________________________________________ > Do You Yahoo!? > Tired of spam? Yahoo! Mail has the best spam > protection around > http://mail.yahoo.com > _______________________________________________ > Pw_forum mailing list > Pw_forum at pwscf.org > http://www.democritos.it/mailman/listinfo/pw_forum > > > > > --------------------------------- > Do You Yahoo!? > ?????????????????????????????? __________________________________________________ Do You Yahoo!? Tired of spam? Yahoo! Mail has the best spam protection around http://mail.yahoo.com From axel.kohlmeyer at theochem.ruhr-uni-bochum.de Mon May 9 11:32:11 2005 From: axel.kohlmeyer at theochem.ruhr-uni-bochum.de (Axel Kohlmeyer) Date: Mon, 9 May 2005 11:32:11 +0200 (CEST) Subject: [Pw_forum] error-but nothing In-Reply-To: <20050509081806.15610.qmail@web15509.mail.cnb.yahoo.com> Message-ID: On Mon, 9 May 2005, [gb2312] ?? ?? wrote: > Dear Dr. : > I have attached the input,output and the error files of the TiC > in the affix as following: hi, in addition to the other remarks about your input, there is another problem: > ************************************************************************************ > &CONTROL > title = TiC , > calculation = 'vc-relax' , > restart_mode = 'from_scratch' , > outdir = '/home/zul2/Tic-pwscf/' , > pseudo_dir = '/home/zul2/pwscf/fhi98PP/bin/Elements/Ham/' , this is pointing to the directory of _input_ files for _generating_ norm-conserving pseudopotentials with the fhipp code. [...] > ATOMIC_SPECIES > Ti 22.00000 22-Ti:h.ini > C 6.00000 06-C:h.ini this is referring to the input files as suspected above, so that will never work. to use pseudopotentials from the fhipp package, you first have to _generate_ and test them (see the excellent tutorial shipped with it), and then convert them to the UPF format using fhi2upf.x. for both elements, however, there are ready to use pseudopotentials available at http://www.pwscf.org/pseudo.htm (just make sure, that you are using consistent functionals). i assume, this input was just to see whether you can run the code at all, right? if not, you should also worry about your plane wave cutoff and the k-point sampling... regards, axel. > ATOMIC_POSITIONS crystal > Ti 0.000000000 0.000000000 0.000000000 > C 0.500000000 0.500000000 0.500000000 > K_POINTS gamma > *********************************************************************************** > > > Eyvaz Isaev ????: > Dear Zhu, > > There is a "nearsightseeing" principle in condensed > matter physics. According to this principle I don't > see your output file, therefore, I do not feel (or > see) an error. > > Bests, > Eyvaz. > > > --- ???? ??#1038; > wrote: > > Dear Eyvaz: > > I'm grateful to you for helping me. > > There is not pseudopotential for Co atom > > except for fhi98pp pseudopotential of Co atom. The > > output file said nothing but just error 136, > > > > Best regards! > > Yours sincerely, > > L.Zhu > > > > Eyvaz Isaev > ??#1169;?#1040;: > > Hello, > > > > It means that it does not depend on PsP, at least. > > I suggest, nobody will be able to say something > > until you send your ouput file. > > > > Bests, > > Eyvaz. > > > > --- ?#1118;?? ?#8470;#1038; > > wrote: > > > Dear everyone: > > > I'm a new user of pwscf, I use the fhi98pp > > > pseudopotential ,but there is an error 136, and > > say > > > nothing, I user other pseudopotential ,it's the > > > same error. I don't know what's wrong. > > > > > > > > > Best regards! > > > > > > > > > > > > > > > --------------------------------- > > > Do You Yahoo!? > > > > > > ?#8470;#1118;#1030;?#1058;???#1038;#1029;?#1065;?#1169;?#1041;?#1081;?#1025;?#1062;???#1044;?#1110;???#1118;???#1059;?#1057;?#1079;???? > > > > __________________________________________________ > > Do You Yahoo!? > > Tired of spam? Yahoo! Mail has the best spam > > protection around > > http://mail.yahoo.com > > _______________________________________________ > > Pw_forum mailing list > > Pw_forum at pwscf.org > > http://www.democritos.it/mailman/listinfo/pw_forum > > > > > > > > --------------------------------- > > Do You Yahoo!? > > ??#1118;#1030;??????#1029;?????#1041;?????#1062;???#1044;?????#1118;?????#1057;?#1079;???? > > __________________________________________________ > Do You Yahoo!? > Tired of spam? Yahoo! Mail has the best spam protection around > http://mail.yahoo.com > _______________________________________________ > Pw_forum mailing list > Pw_forum at pwscf.org > http://www.democritos.it/mailman/listinfo/pw_forum > > > > > --------------------------------- > Do You Yahoo!? > ?????????????????????????????? -- ======================================================================= Dr. Axel Kohlmeyer e-mail: axel.kohlmeyer at theochem.ruhr-uni-bochum.de Lehrstuhl fuer Theoretische Chemie Phone: ++49 (0)234/32-26673 Ruhr-Universitaet Bochum - NC 03/53 Fax: ++49 (0)234/32-14045 D-44780 Bochum http://www.theochem.ruhr-uni-bochum.de/~axel.kohlmeyer/ ======================================================================= If you make something idiot-proof, the universe creates a better idiot. From rjxiao at blem.ac.cn Mon May 9 15:31:42 2005 From: rjxiao at blem.ac.cn (Ruijuan Xiao) Date: Mon, 9 May 2005 21:31:42 +0800 Subject: [Pw_forum] About spilling parameter Message-ID: <20050509133130.BE5AA112783@democritos.sissa.it> Dear Stefano de Girocoli, Thanks very much for your detailed explanation about the spilling parameter.I'll check my calculations. Best regards, Yours sincerely, Ruijuan Xiao From giannozz at nest.sns.it Mon May 9 19:46:40 2005 From: giannozz at nest.sns.it (Paolo Giannozzi) Date: Mon, 9 May 2005 17:46:40 +0000 Subject: [Pw_forum] optimal alpha not found In-Reply-To: <20050505174333.98271.qmail@web60322.mail.yahoo.com> References: <20050505174333.98271.qmail@web60322.mail.yahoo.com> Message-ID: <200505091746.40881.giannozz@nest.sns.it> On Thursday 05 May 2005 17:43, Eyvaz Isaev wrote: > Actually, the error means that the Ewald sum (ion-ion > energy contribution) could not converge for some > reason. I have to remind that the Ewald sum consists > of two parts: erf(\alpha R)/R and erfc(\alpha R)/R. > The first term has a fast convergence in G-space, > while the second term converges in R-space. > There are also 2 \alpha-dependent contributions, > excluded from sums. > Optimum \alpha has to be chosen so that it gives good > convergence for both G-, and R- sums. the exact meaning of the error is that the code (PW/ewald.f90) could not determine a value for alpha giving a converged G-space sum for the available set of G-vectors. "Optimal" is somewhat misleading in this respect. The only reasons for such error I can think of, iare either a very weird structure, or an exceedingly low cutoff Paolo -- Paolo Giannozzi e-mail: giannozz at nest.sns.it Scuola Normale Superiore Phone: +39/050-509876, Fax:-563513 Piazza dei Cavalieri 7 I-56126 Pisa, Italy From xinjie at physics.rutgers.edu Mon May 9 17:50:45 2005 From: xinjie at physics.rutgers.edu (Xinjie Wang) Date: Mon, 09 May 2005 11:50:45 -0400 Subject: [Pw_forum] A question about generating NC-pseudopotential for Fe Message-ID: <427F86D5.2020102@physics.rutgers.edu> Dear all, I had a hard time in generating Norm-conserving pseudopotential with semi-core 3s2 3p6 in valence. I used the configuration 3s2 3p6 3d6 4s2 and set pseudotype=2. The pseudo wavefunctions are: 3P 2 1 6.00 0.0 2.0 2.0 3S 1 0 2.00 0.0 2.0 2.0 3D 3 2 6.0 0.0 2.0 2.0 4S 4 0 2.00 0.0 2.0 2.0 I tried different cutoffs and local potentials, but always got error meassages Try bisec -11.63726105189093 -1.7094082748748320E-004 Try bisec -11.63726105189093 -6.017343181902373 I am wondering if LD1 can handle 3S and 4S at the same time. Many thanks in advance! Xinjie Wang From eyvaz_isaev at yahoo.com Mon May 9 18:30:41 2005 From: eyvaz_isaev at yahoo.com (Eyvaz Isaev) Date: Mon, 9 May 2005 09:30:41 -0700 (PDT) Subject: [Pw_forum] optimal alpha not found In-Reply-To: 6667 Message-ID: <20050509163041.19818.qmail@web60311.mail.yahoo.com> Dear Paolo, Thanks for correction. Bests, Eyvaz. --- Paolo Giannozzi wrote: > On Thursday 05 May 2005 17:43, Eyvaz Isaev wrote: > > > Actually, the error means that the Ewald sum > (ion-ion > > energy contribution) could not converge for some > > reason. I have to remind that the Ewald sum > consists > > of two parts: erf(\alpha R)/R and erfc(\alpha > R)/R. > > The first term has a fast convergence in G-space, > > while the second term converges in R-space. > > There are also 2 \alpha-dependent contributions, > > excluded from sums. > > Optimum \alpha has to be chosen so that it gives > good > > convergence for both G-, and R- sums. > > the exact meaning of the error is that the code > (PW/ewald.f90) > could not determine a value for alpha giving a > converged > G-space sum for the available set of G-vectors. > "Optimal" > is somewhat misleading in this respect. The only > reasons > for such error I can think of, iare either a very > weird structure, > or an exceedingly low cutoff > > Paolo > > -- > Paolo Giannozzi e-mail: > giannozz at nest.sns.it > Scuola Normale Superiore Phone: +39/050-509876, > Fax:-563513 > Piazza dei Cavalieri 7 I-56126 Pisa, Italy > _______________________________________________ > Pw_forum mailing list > Pw_forum at pwscf.org > http://www.democritos.it/mailman/listinfo/pw_forum > Yahoo! Mail Stay connected, organized, and protected. Take the tour: http://tour.mail.yahoo.com/mailtour.html From axel.kohlmeyer at theochem.ruhr-uni-bochum.de Mon May 9 20:54:01 2005 From: axel.kohlmeyer at theochem.ruhr-uni-bochum.de (Axel Kohlmeyer) Date: Mon, 9 May 2005 20:54:01 +0200 (CEST) Subject: [Pw_forum] A question about generating NC-pseudopotential for Fe In-Reply-To: <427F86D5.2020102@physics.rutgers.edu> Message-ID: On Mon, 9 May 2005, Xinjie Wang wrote: XW> Dear all, dear xinjie wang, XW> I had a hard time in generating Norm-conserving pseudopotential XW> with semi-core 3s2 3p6 in valence. XW> XW> I used the configuration 3s2 3p6 3d6 4s2 and set pseudotype=2. XW> The pseudo wavefunctions are: XW> 3P 2 1 6.00 0.0 2.0 2.0 XW> 3S 1 0 2.00 0.0 2.0 2.0 XW> 3D 3 2 6.0 0.0 2.0 2.0 XW> 4S 4 0 2.00 0.0 2.0 2.0 hmmm, isn't a rcut of 2.0 is a little large for that kind of atom? XW> I tried different cutoffs and local potentials, but always got error XW> meassages XW> Try bisec -11.63726105189093 -1.7094082748748320E-004 XW> Try bisec -11.63726105189093 -6.017343181902373 XW> XW> I am wondering if LD1 can handle 3S and 4S at the same time. for the Troullier-Martins scheme of generating norm-conserving pseudopotentials 4S has to be empty. regards, axel. XW> XW> Many thanks in advance! XW> XW> Xinjie Wang XW> XW> XW> XW> XW> XW> XW> XW> XW> _______________________________________________ XW> Pw_forum mailing list XW> Pw_forum at pwscf.org XW> http://www.democritos.it/mailman/listinfo/pw_forum XW> XW> -- ======================================================================= Dr. Axel Kohlmeyer e-mail: axel.kohlmeyer at theochem.ruhr-uni-bochum.de Lehrstuhl fuer Theoretische Chemie Phone: ++49 (0)234/32-26673 Ruhr-Universitaet Bochum - NC 03/53 Fax: ++49 (0)234/32-14045 D-44780 Bochum http://www.theochem.ruhr-uni-bochum.de/~axel.kohlmeyer/ ======================================================================= If you make something idiot-proof, the universe creates a better idiot. From xinjie at physics.rutgers.edu Mon May 9 21:29:10 2005 From: xinjie at physics.rutgers.edu (Xinjie Wang) Date: Mon, 09 May 2005 15:29:10 -0400 Subject: [Pw_forum] A question about generating NC-pseudopotential for Fe In-Reply-To: References: Message-ID: <427FBA06.2050606@physics.rutgers.edu> Dear Axel Kohlmeyer Thanks a lot for your reply. >XW> I used the configuration 3s2 3p6 3d6 4s2 and set pseudotype=2. >XW> The pseudo wavefunctions are: >XW> 3P 2 1 6.00 0.0 2.0 2.0 >XW> 3S 1 0 2.00 0.0 2.0 2.0 >XW> 3D 3 2 6.0 0.0 2.0 2.0 >XW> 4S 4 0 2.00 0.0 2.0 2.0 > >hmmm, isn't a rcut of 2.0 is a little large >for that kind of atom? > > > I tried many other rcuts and the results are the same. >XW> I tried different cutoffs and local potentials, but always got error >XW> meassages >XW> Try bisec -11.63726105189093 -1.7094082748748320E-004 >XW> Try bisec -11.63726105189093 -6.017343181902373 >XW> >XW> I am wondering if LD1 can handle 3S and 4S at the same time. > >for the Troullier-Martins scheme of generating >norm-conserving pseudopotentials 4S has to be empty. > > > In /atomic_doc/pseduo-gen.tex , it is said that multiple projectors per angular momentum in NC-PP are allowed. Do you mean that the second or third projector should not be generated from occupied states (for example 4s2)? Best, Xinjie From axel.kohlmeyer at theochem.ruhr-uni-bochum.de Mon May 9 21:49:44 2005 From: axel.kohlmeyer at theochem.ruhr-uni-bochum.de (Axel Kohlmeyer) Date: Mon, 9 May 2005 21:49:44 +0200 (CEST) Subject: [Pw_forum] A question about generating NC-pseudopotential for Fe In-Reply-To: <427FBA06.2050606@physics.rutgers.edu> Message-ID: On Mon, 9 May 2005, Xinjie Wang wrote: dear xinjie, XW> Dear Axel Kohlmeyer XW> XW> >XW> I used the configuration 3s2 3p6 3d6 4s2 and set pseudotype=2. XW> >XW> The pseudo wavefunctions are: XW> >XW> 3P 2 1 6.00 0.0 2.0 2.0 XW> >XW> 3S 1 0 2.00 0.0 2.0 2.0 XW> >XW> 3D 3 2 6.0 0.0 2.0 2.0 XW> >XW> 4S 4 0 2.00 0.0 2.0 2.0 XW> > XW> >hmmm, isn't a rcut of 2.0 is a little large XW> >for that kind of atom? XW> > XW> I tried many other rcuts and the results are the same. ok. so rcut is not the issue. XW> >XW> I tried different cutoffs and local potentials, but always got error XW> >XW> meassages XW> >XW> Try bisec -11.63726105189093 -1.7094082748748320E-004 XW> >XW> Try bisec -11.63726105189093 -6.017343181902373 XW> >XW> XW> >XW> I am wondering if LD1 can handle 3S and 4S at the same time. XW> > XW> >for the Troullier-Martins scheme of generating XW> >norm-conserving pseudopotentials 4S has to be empty. XW> > XW> > XW> > XW> In /atomic_doc/pseduo-gen.tex , it is said that multiple projectors per XW> angular momentum in NC-PP are allowed. XW> Do you mean that the second or third projector should not be generated XW> from occupied states (for example 4s2)? sorry, my mistake. i have overlooked, that you have set pseudotype to 2. i have no experience with that kind of pseudopotential. perhaps somebody else can help. you may want to try the cvs version of the espresso code instead. perhaps the problem that you are seeing has been fixed in the meantime. regards, axel. XW> XW> Best, XW> Xinjie XW> XW> XW> XW> _______________________________________________ XW> Pw_forum mailing list XW> Pw_forum at pwscf.org XW> http://www.democritos.it/mailman/listinfo/pw_forum XW> XW> -- ======================================================================= Dr. Axel Kohlmeyer e-mail: axel.kohlmeyer at theochem.ruhr-uni-bochum.de Lehrstuhl fuer Theoretische Chemie Phone: ++49 (0)234/32-26673 Ruhr-Universitaet Bochum - NC 03/53 Fax: ++49 (0)234/32-14045 D-44780 Bochum http://www.theochem.ruhr-uni-bochum.de/~axel.kohlmeyer/ ======================================================================= If you make something idiot-proof, the universe creates a better idiot. From phyliul at nus.edu.sg Tue May 10 05:13:08 2005 From: phyliul at nus.edu.sg (Liu Lei) Date: Tue, 10 May 2005 11:13:08 +0800 Subject: [Pw_forum] electron-phonon interaction coefficient lambda of MgB2 by PWscf? Message-ID: <353B84412D651A43BA886B3EDCDB8B9A06A761@MBOX03.stf.nus.edu.sg> Dear all, I calculated electron-phonon interaction coefficient lambda of MgB2 by PWscf. I got the value lambda=0.6, it seems a little bit too small. Anyone try MgB2 before, would you please kindly give me some suggestions and comments? The below is my setting. Thanks and regards, LIU, LEI PSEUDO_LIST="B.pz-vbc.UPF Mg.pz-n-vbc.UPF " Electronic # self-consistent calculation and # non self-consistent calculation K_POINTS (automatic) 24 24 12 0 0 0 # denser grid K_POINTS (automatic) 48 48 24 0 0 0 Phonon integration at K_POINTS (automatic) 6 6 6 0 0 0 -------------- next part -------------- An HTML attachment was scrubbed... URL: /pipermail/attachments/20050510/a68ee1a3/attachment.htm From giannozz at nest.sns.it Tue May 10 11:47:22 2005 From: giannozz at nest.sns.it (Paolo Giannozzi) Date: Tue, 10 May 2005 09:47:22 +0000 Subject: [Pw_forum] A question about generating NC-pseudopotential for Fe In-Reply-To: <427F86D5.2020102@physics.rutgers.edu> References: <427F86D5.2020102@physics.rutgers.edu> Message-ID: <200505100947.22377.giannozz@nest.sns.it> On Monday 09 May 2005 15:50, Xinjie Wang wrote: > I had a hard time in generating Norm-conserving > pseudopotential with semi-core 3s2 3p6 in valence. you had a hard time in generating a hard pseudopotential :-) > I used the configuration 3s2 3p6 3d6 4s2 and set pseudotype=2 i.e. more than one state per angular momentum, nonlocal form. > I am wondering if LD1 can handle 3S and 4S at the same time. presently you cannot use both 3s and 4s states to generate a (norm-conserving) pseudopotential, because the pseudization may produce only nodeless pseudo-states. For the case pseudotype=1, i.e. one state per angular momentum, semilocal form, the procedure is explained in some detail in the notes: atomic_doc/pseudo-gen.tex . Remember to check for the nonlocal form as well (convert the PP with the auxiliaty codes in upftools/). In any event, you will get a horribly hard PP. P. -- Paolo Giannozzi e-mail: giannozz at nest.sns.it Scuola Normale Superiore Phone: +39/050-509876, Fax:-563513 Piazza dei Cavalieri 7 I-56126 Pisa, Italy From giannozz at nest.sns.it Tue May 10 12:05:21 2005 From: giannozz at nest.sns.it (Paolo Giannozzi) Date: Tue, 10 May 2005 10:05:21 +0000 Subject: [Pw_forum] to Paolo Giannozzi In-Reply-To: <200505051355.j45DtbMp003676@mail.ihep.ac.cn> References: <200505051355.j45DtbMp003676@mail.ihep.ac.cn> Message-ID: <200505101005.21412.giannozz@nest.sns.it> On Thursday 05 May 2005 14:16, Shaorui Sun wrote: > I have change the value of "zval" from 2 to 12,but the output > information is still seems like that of last time [...] You were using pseudotype=2 with only one state per angular momentum (you can) and E=0.15 Ry for 3d: > 4S 1 0 2.00 0.00 2.30 2.30 1 > 4P 2 1 0.00 0.00 2.30 2.30 1 > 3D 3 2 10.00 0.15 2.30 2.30 1 You should use instead the bound state energy for 3d (specify 0.00 instead of 0.15). Note that the resulting PP will be horribly hard. P. -- Paolo Giannozzi e-mail: p.giannozzi at sns.it Scuola Normale Superiore Phone: +39/050-509876, Fax:-563513 Piazza dei Cavalieri 7 I-56126 Pisa, Italy From giannozz at nest.sns.it Tue May 10 16:00:51 2005 From: giannozz at nest.sns.it (Paolo Giannozzi) Date: Tue, 10 May 2005 14:00:51 +0000 Subject: [Pw_forum] Ram.x In-Reply-To: References: Message-ID: <200505101400.51170.giannozz@nest.sns.it> On Friday 06 May 2005 07:37, Stefano Angioletti wrote: > I'm receiving this error message "k+b is not a k point" when > trying to run ram.x for the calculation of the Raman tensor you followed example 15, didn't you? -- Paolo Giannozzi e-mail: giannozz at nest.sns.it Scuola Normale Superiore Phone: +39/050-509876, Fax:-563513 Piazza dei Cavalieri 7 I-56126 Pisa, Italy From xinjie at physics.rutgers.edu Tue May 10 17:21:59 2005 From: xinjie at physics.rutgers.edu (Xinjie Wang) Date: Tue, 10 May 2005 11:21:59 -0400 Subject: [Pw_forum] A question about generating NC-pseudopotential for Fe In-Reply-To: <200505100947.22377.giannozz@nest.sns.it> References: <427F86D5.2020102@physics.rutgers.edu> <200505100947.22377.giannozz@nest.sns.it> Message-ID: <4280D196.4030204@physics.rutgers.edu> Dear, Paolo Thanks a lot. >>I am wondering if LD1 can handle 3S and 4S at the same time. >> >> > >presently you cannot use both 3s and 4s states to generate a >(norm-conserving) pseudopotential, because the pseudization >may produce only nodeless pseudo-states. > > I see. >For the case pseudotype=1, i.e. one state per angular momentum, >semilocal form, the procedure is explained in some detail in the >notes: atomic_doc/pseudo-gen.tex . Remember to check for the >nonlocal form as well (convert the PP with the auxiliaty codes in >upftools/). In any event, you will get a horribly hard PP. > > My purpose is to generate a NC-PP for Fe as good as possible regardless of how hard it is. In this case of pseudotype=2, rel=2, can I use more than one projector (not state) per angular momentum to get good results? Best, Xinjie From giannozz at nest.sns.it Tue May 10 21:07:25 2005 From: giannozz at nest.sns.it (Paolo Giannozzi) Date: Tue, 10 May 2005 21:07:25 +0200 Subject: [Pw_forum] A question about generating NC-pseudopotential for Fe In-Reply-To: <4280D196.4030204@physics.rutgers.edu> References: <427F86D5.2020102@physics.rutgers.edu> <200505100947.22377.giannozz@nest.sns.it> <4280D196.4030204@physics.rutgers.edu> Message-ID: <200505102107.25100.giannozz@nest.sns.it> On Tuesday 10 May 2005 17:21, Xinjie Wang wrote: > My purpose is to generate a NC-PP for Fe as good as possible regardless > of how hard it is. > In this case of pseudotype=2, rel=2, can I use more than one projector > (not state) per angular momentum to get good results? My understanding is that you can use the semicore (3s) state and another (unbound) state at an energy not too close and not too far from the energy of the former. Presently you cannot use both the semicore and the valence (4s) state: they have to be orthogonal to each other, i.e. the valence state has to have a node, and this is not presently implemented. I have always used only the semicore states in such cases, but the resulting PPs are not exceedingly accurate: they work very well in the energy region around semicore states, less so around valence states. Of course it would be preferrable to use more than one projector (i.e. state, bound or unbound) per angular momentum Paolo From marzari at MIT.EDU Wed May 11 02:43:26 2005 From: marzari at MIT.EDU (Nicola Marzari) Date: Tue, 10 May 2005 20:43:26 -0400 Subject: [Pw_forum] A question about generating NC-pseudopotential for Fe In-Reply-To: <200505102107.25100.giannozz@nest.sns.it> References: <427F86D5.2020102@physics.rutgers.edu> <200505100947.22377.giannozz@nest.sns.it> <4280D196.4030204@physics.rutgers.edu> <200505102107.25100.giannozz@nest.sns.it> Message-ID: <4281552E.7090509@mit.edu> Dear Xinjie, maybe you could keep the 3s in the core, and have only the 3p in valence. Then, you end up with a 14 e- psp with a s channel tuned for the 4s; you could test this against the 16 e- ultrasoft pseudopotentials from the pwscf database Fe.pbe-sp-van.UPF and Fe.pbe-sp-van_mit.UPF (the latter one is tuned for ionic configurations - i.e. Fe 2+ and 3+). A very good test for accuracy are the energy splitting of the multiplets - I'll send you a table of what we have obtained. Best, nicola Paolo Giannozzi wrote: > On Tuesday 10 May 2005 17:21, Xinjie Wang wrote: > > >>My purpose is to generate a NC-PP for Fe as good as possible regardless >>of how hard it is. >>In this case of pseudotype=2, rel=2, can I use more than one projector >>(not state) per angular momentum to get good results? > > > My understanding is that you can use the semicore (3s) state and another > (unbound) state at an energy not too close and not too far from the energy > of the former. Presently you cannot use both the semicore and the valence > (4s) state: they have to be orthogonal to each other, i.e. the valence state > has to have a node, and this is not presently implemented. > > I have always used only the semicore states in such cases, but the > resulting PPs are not exceedingly accurate: they work very well in > the energy region around semicore states, less so around valence > states. Of course it would be preferrable to use more than one > projector (i.e. state, bound or unbound) per angular momentum > > Paolo > _______________________________________________ > Pw_forum mailing list > Pw_forum at pwscf.org > http://www.democritos.it/mailman/listinfo/pw_forum -- --------------------------------------------------------------------- Prof Nicola Marzari Department of Materials Science and Engineering 13-5066 MIT 77 Massachusetts Avenue Cambridge MA 02139-4307 USA tel 617.4522758 fax 617.2586534 marzari at mit.edu http://nnn.mit.edu From yuwen_66 at yahoo.com Sat May 14 04:55:50 2005 From: yuwen_66 at yahoo.com (W. YU) Date: Fri, 13 May 2005 19:55:50 -0700 (PDT) Subject: [Pw_forum] M3 phonon degeneracy of ReO3 Message-ID: <20050514025550.61966.qmail@web51004.mail.yahoo.com> Dear PW users, I am now doing first principles phonon dispersion caculations using PW on a system similar to ReO3( which is ABO3 perovskite structure without A atom). For this reason, I have read several papers concerning this structure including PRB V33, 4793 (1986). In this paper( also in the paper by J. D. Axe cited by this paper ), the soft phonon M3 mode is said to be triply degenerate corresponding to the Octhedra rotation around three principle axes. But from theoretical analysis, as done by E. Wigner (Phys. Rev. V50, 58(1936)) and R. A. Cowley (Phys. Rev. V134 A981 (1964)), there is no triply degenerate modes at M point, only doubly degenerate and nondegenerate modes. Especially, the M3 mode is nondegenerate. My calculation also similar to the theoretical analysis. But since several well cited papers mentioned the triplet degeneracy of M3, I am confused about this. Maybe I misunderstood something here, but I just couldn't figure it out. This question may be unsuitable for this group, but I can't find the original authors such as J. D. Axe 's information to consult. So I post it here, hope someone might be interested in it. Your kind reply would be much appreciated. W. YU Discover Yahoo! Have fun online with music videos, cool games, IM and more. Check it out! http://discover.yahoo.com/online.html From giannozz at nest.sns.it Sat May 14 17:35:47 2005 From: giannozz at nest.sns.it (Paolo Giannozzi) Date: Sat, 14 May 2005 15:35:47 +0000 Subject: [Pw_forum] M3 phonon degeneracy of ReO3 In-Reply-To: <20050514025550.61966.qmail@web51004.mail.yahoo.com> References: <20050514025550.61966.qmail@web51004.mail.yahoo.com> Message-ID: <200505141535.47526.giannozz@nest.sns.it> On Saturday 14 May 2005 02:55, W. YU wrote: > I am now doing first principles phonon dispersion > caculations using PW on a system similar to ReO3( > which is ABO3 perovskite structure without A atom). > [...] the soft phonon M3 mode is said to be triply > degenerate corresponding to the Octhedra rotation > around three principle axes. But from theoretical > analysis, as done by E. Wigner (Phys. Rev. V50, > 58(1936)) and R. A. Cowley (Phys. Rev. V134 A981 > (1964)), there is no triply degenerate modes at M > point, only doubly degenerate and nondegenerate > modes. Especially, the M3 mode is nondegenerate. I know nothing about the specific materials, so I am just guessing: maybe at each q-vector M the M3 modes is nondegenerate, but there are three distinct q-vectors for M, related by symmetry? Paolo -- Paolo Giannozzi e-mail: giannozz at nest.sns.it Scuola Normale Superiore Phone: +39/050-509876, Fax:-563513 Piazza dei Cavalieri 7 I-56126 Pisa, Italy From damians at MIT.EDU Thu May 19 00:30:17 2005 From: damians at MIT.EDU (Damian A Scherlis Perel) Date: Wed, 18 May 2005 18:30:17 -0400 (EDT) Subject: [Pw_forum] LDA+U and noncollinear spin In-Reply-To: <4280D196.4030204@physics.rutgers.edu> Message-ID: Dear all, is the LDA+U method operational for noncollinear spin calculations in espresso-2.1.3 ? I thought it is because the subroutine PWNC/vhpsi.f90 has been modified with respect to PW/vhpsi.f90, but in my trial runs the code crashes with the message Atomic wfc used for LDA+U Projector are NOT orthogonalized Any help will be greatly appreciated. Thanks! damian ------------------------ Damian Scherlis Department of Materials Science & Engineering Massachusetts Institute of Technology damians at mit.edu 617 253 6026 From degironc at sissa.it Thu May 19 09:39:10 2005 From: degironc at sissa.it (Stefano de Gironcoli) Date: Thu, 19 May 2005 09:39:10 +0200 Subject: [Pw_forum] LDA+U and noncollinear spin References: Message-ID: <428C429E.5000804@sissa.it> unfortunately not. The two features have been developped independently and their joint use is currently unsafe (nobody thought about it so far). The easy thing is to add an error message that stops the code when one asks to use them toghether (it will be added in the CVS version). The difficult one is to work out what LDA+U should be in the non-collinear case.... any help is welcome for that. Stefano de Gironcoli Damian A Scherlis Perel wrote: > Dear all, > > is the LDA+U method operational for noncollinear > spin calculations in espresso-2.1.3 ? > I thought it is because the subroutine PWNC/vhpsi.f90 has > been modified with respect to PW/vhpsi.f90, but > in my trial runs the code crashes with the message > >Atomic wfc used for LDA+U Projector are NOT orthogonalized > > Any help will be greatly appreciated. > Thanks! > damian > > ------------------------ > Damian Scherlis > Department of Materials Science & Engineering > Massachusetts Institute of Technology > damians at mit.edu > 617 253 6026 > >_______________________________________________ >Pw_forum mailing list >Pw_forum at pwscf.org >http://www.democritos.it/mailman/listinfo/pw_forum > > From himanshu at apsara.barc.ernet.in Fri May 20 06:24:39 2005 From: himanshu at apsara.barc.ernet.in (himanshu at apsara.barc.ernet.in) Date: Fri, 20 May 2005 09:54:39 +0530 (IST) Subject: [Pw_forum] elastic constant Message-ID: <1116563079.428d66871cc8b@bts.barc.ernet.in> Dear All I want to calculate elastic constant of an orthorhombic system using stress calculation. I have gone through many papers. There it is written that to determine nine elastic constant, three orthorhombic and one triclinic strain is requred. But I could not understand whether the strain should be volume conserving or not. And what orthorhombic, triclinic matrix I sould use.I will appreciate your help. With Best Regards Himanshu ------------------------------------------------- From lijun_physics at yahoo.com.cn Mon May 23 05:49:38 2005 From: lijun_physics at yahoo.com.cn (=?gb2312?q?=C1=A2=BE=FC=20=D5=C5?=) Date: Mon, 23 May 2005 11:49:38 +0800 (CST) Subject: [Pw_forum] About eigenvector of phonon Message-ID: <20050523034939.92895.qmail@web15605.mail.cnb.yahoo.com> Dear all, I am doning some phonon calculations ,and I wanted to know schematic representations of the atomic motions for some phonon modes.how to do it ,and is there some software designed for it? Best Regards Lijun Zhang --------------------------------- Do You Yahoo!? 150??MP3???????????? ??????????????????? 1G??1000??????????? -------------- next part -------------- An HTML attachment was scrubbed... URL: /pipermail/attachments/20050523/f12b9da7/attachment.htm From giannozz at nest.sns.it Mon May 23 12:02:08 2005 From: giannozz at nest.sns.it (Paolo Giannozzi) Date: Mon, 23 May 2005 10:02:08 +0000 Subject: [Pw_forum] About eigenvector of phonon In-Reply-To: <20050523034939.92895.qmail@web15605.mail.cnb.yahoo.com> References: <20050523034939.92895.qmail@web15605.mail.cnb.yahoo.com> Message-ID: <200505231002.08579.giannozz@nest.sns.it> On Monday 23 May 2005 03:49, ?? ? wrote: > I am doing some phonon calculations ,and I wanted to know > schematice representations of the atomic motions for some > phonon modes. How to do it, and is there some software > designed for it? Best Regards for q=0 phonons, program "dynmat.x" produces a file in a format that can be read and plotted by "molden". P. -- Paolo Giannozzi e-mail: giannozz at nest.sns.it Scuola Normale Superiore Phone: +39/050-509876, Fax:-563513 Piazza dei Cavalieri 7 I-56126 Pisa, Italy From lijun_physics at yahoo.com.cn Tue May 24 10:03:03 2005 From: lijun_physics at yahoo.com.cn (zhanglijun) Date: Tue, 24 May 2005 16:03:03 +0800 (CST) Subject: [Pw_forum] About eigenvector of phonon In-Reply-To: 6667 Message-ID: <20050524080303.3685.qmail@web15604.mail.cnb.yahoo.com> Hi,Paolo Giannozzi, How about q is not equal to 0? Is the program "dynmat.x" appropriate? Bests, Zhanglijun Paolo Giannozzi ??: On Monday 23 May 2005 03:49, ?? ? wrote: > I am doing some phonon calculations ,and I wanted to know > schematice representations of the atomic motions for some > phonon modes. How to do it, and is there some software > designed for it? Best Regards for q=0 phonons, program "dynmat.x" produces a file in a format that can be read and plotted by "molden". P. -- Paolo Giannozzi e-mail: giannozz at nest.sns.it Scuola Normale Superiore Phone: +39/050-509876, Fax:-563513 Piazza dei Cavalieri 7 I-56126 Pisa, Italy _______________________________________________ Pw_forum mailing list Pw_forum at pwscf.org http://www.democritos.it/mailman/listinfo/pw_forum --------------------------------- Do You Yahoo!? 150??MP3???????????? ??????????????????? 1G??1000??????????? -------------- next part -------------- An HTML attachment was scrubbed... URL: /pipermail/attachments/20050524/ef3ceb01/attachment.htm From giannozz at nest.sns.it Tue May 24 13:48:53 2005 From: giannozz at nest.sns.it (Paolo Giannozzi) Date: Tue, 24 May 2005 11:48:53 +0000 Subject: [Pw_forum] About eigenvector of phonon In-Reply-To: <20050524080303.3685.qmail@web15604.mail.cnb.yahoo.com> References: <20050524080303.3685.qmail@web15604.mail.cnb.yahoo.com> Message-ID: <200505241148.53979.giannozz@nest.sns.it> On Tuesday 24 May 2005 08:03, zhanglijun wrote: > How about q is not equal to 0? > Is the program "dynmat.x" appropriate? it might actually work for q!=0 as well (no warranty that it does). Of course, you have to supply the dynamical matrix for the desired q and not to impose acoustic sum rule. P. -- Paolo Giannozzi e-mail: giannozz at nest.sns.it Scuola Normale Superiore Phone: +39/050-509876, Fax:-563513 Piazza dei Cavalieri 7 I-56126 Pisa, Italy From sunsr at ihep.ac.cn Wed May 25 07:15:31 2005 From: sunsr at ihep.ac.cn (Shaorui Sun) Date: Wed, 25 May 2005 13:15:31 +0800 Subject: [Pw_forum] question about the example2 Message-ID: <200505250453.j4P4rUfJ024794@mail.ihep.ac.cn> Dear all: The example2 is about the phonon mode computation of Gamma and X points for the silicon. In the example, the k-points were set as: K_POINTS 10 0.1250000 0.1250000 0.1250000 1.00 0.1250000 0.1250000 0.3750000 3.00 0.1250000 0.1250000 0.6250000 3.00 0.1250000 0.1250000 0.8750000 3.00 0.1250000 0.3750000 0.3750000 3.00 0.1250000 0.3750000 0.6250000 6.00 0.1250000 0.3750000 0.8750000 6.00 0.1250000 0.6250000 0.6250000 3.00 0.3750000 0.3750000 0.3750000 1.00 0.3750000 0.3750000 0.6250000 3.00 ----------------------------------------------------- the results are reasonable agree with the experimental results. But when I use those K-points for the K(0.75,0.75,0) and L(0.5,0.5,0.5) points, the results are not good (L(TA)) which are listed in the 2nd column of the table . I also use k-points automatic generated with : K_POINTS automatic 8 8 8 1 1 1 the wavelengths of the phonon modes for the four points (listed in the 3rd column of the table)are all different from the experimental results, especially for the low frequency modes, such as the X(TA) and L(TA). *********************************************************************************************** ------------------------------------------------------------------------------------------ experimental(cm-1) special points automatic generation computational(cm-1) computational(cm-1) Gamma(TO) 517 510 501 Gamma(LO) 517 510 501 X(TA) 150 140 212 X(LA) 410 408 427 X(TO) 463 458 468 X(LO) 410 408 427 L(TA) 114 190 190 L(LA) 378 402 398 L(TO) 487 509 498 L(LO) 417 437 424 --------------------------------------------------------------------------------------- ************************************************************************************************ the experimental result get from the paper: P.R.B. 43, 7231 Paolo Giannozzi,Stefano de Gironcoli, Pasquale Pavone and Stefano Baroni the pw input file for the X point with k-poins generated automatically is shown as follows: &control calculation='phonon' prefix = 'Si-X' pseudo_dir = '/home/wien2k/pw/pseudo/', outdir='/biology/wien2k/pwwork/Si/v0/X/' / &system ibrav= 2, celldm(1) =10.263107, nat= 2, ntyp= 1, ecutwfc =18.0, / &electrons conv_thr = 1.0d-8 / &phonon xqq(1)=1.0, xqq(2)=0.0, xqq(3)=0.0 / ATOMIC_SPECIES Si 28.086 Si.vbc.UPF ATOMIC_POSITIONS Si 0.00 0.00 0.00 Si 0.25 0.25 0.25 K_POINTS automatic 8 8 8 1 1 1 ----------------------------------------- while the ph files for the X point is shown as follows : &inputph tr2_ph=1.0d-14, prefix='Si-X', amass(1)=28.08, outdir='/biology/wien2k/pwwork/Si/v0/X/', fildyn='Si-X.dynX', / 1.0 0.0 0.0 ------------------------------------------------------ Why the k-points generated with automatic mode could not get the right results, or Is there something wrong in my input files? Is there deeply difference between the two ways of setting k-points? Must I produce different k-points for different points in reciprocal space by hand, and how to do that for the K and L points? Any direction,comments or examples are appreciated! Best Regards! S. R. Sun --------------------------------------------- Beijing Synchrotron Radiation Facility Institute of High Energy Physics Chinese Academy of Sciences P. O. Box 918, 100049 Beijing P. R. China Tel: 0086+10 88236710 email:sunsr at ihep.ac.cn From geminisampson at yahoo.com.cn Wed May 25 11:59:22 2005 From: geminisampson at yahoo.com.cn (Gemini Sampson) Date: Wed, 25 May 2005 02:59:22 -0700 (PDT) Subject: [Pw_forum] Setup Problems! Message-ID: <20050525095922.99108.qmail@web15006.mail.cnb.yahoo.com> Those are the details: checking for library containing zggev... no in /usr/local/lib: checking for library containing zggev... no in /home/pwscf/lib: checking for library containing zggev... no checking for library containing fftwnd... no in /usr/local/lib: checking for library containing fftwnd... no in /home/pwscf/lib: checking for library containing fftwnd... -lfftw checking for library containing dgemm... -lf77blas checking for library containing zggev... no in /usr/local/lib: checking for library containing zggev... no in /home/pwscf/lib: checking for library containing zggev... no checking for library containing mpi_init... no setting LIBS... -lf77blas -latlas -lg2c -L/home/pwscf/lib -lfftw checking for library containing mpi_init... (cached) no checking for library containing zggev... (cached) no checking for library containing fftwnd... (cached) -lfftw checking fftw.h usability... no checking fftw.h presence... no checking for fftw.h... no The following libraries have been found: LIBS= -lf77blas -latlas -lg2c -L/home/pwscf/lib -lfftw WARNING: fftw library detected, but fftw.h not found It cannot find "zggev","fftwnd","fftw.h".Is it important? Where can I get them? --------------------------------- Do You Yahoo!? Yahoo! Small Business - Try our new Resources site! -------------- next part -------------- An HTML attachment was scrubbed... URL: /pipermail/attachments/20050525/405582f0/attachment.htm From g.ballabio at cineca.it Wed May 25 12:26:14 2005 From: g.ballabio at cineca.it (Gerardo Ballabio) Date: Wed, 25 May 2005 12:26:14 +0200 (MEST) Subject: [Pw_forum] Setup Problems! In-Reply-To: <20050525095922.99108.qmail@web15006.mail.cnb.yahoo.com> (from geminisampson@yahoo.com.cn on Wed May 25 11:59:22 2005) References: <20050525095922.99108.qmail@web15006.mail.cnb.yahoo.com> Message-ID: <1117016768l.12064l.0l@nb-ballabio.cineca.it> On 05/25/05 11:59:22, Gemini Sampson wrote: > The following libraries have been found: > LIBS= -lf77blas -latlas -lg2c -L/home/pwscf/lib -lfftw > WARNING: fftw library detected, but fftw.h not found > > It cannot find "zggev","fftwnd","fftw.h".Is it important? > Where can I get them? This means that configure wasn't able to find working Lapack and FFTW libraries on your system. The Espresso distribution does contain a portable implementation of these libraries, so you can still compile and run it. However if you can obtain and use versions of these libraries optimized for your machine, you may experience significant performance improvements. If these libraries do exist on your system, but configure isn't able to detect them, you may give it some hints. The Espresso User's Guide (in the Doc directory of the Espresso distribution, or online at www.pwscf.org) tells you how. In fact, an fftw library has been found, but configure failed to locate the corresponding fftw.h file. This means that either your installation of FFTW is incomplete, or configure just looked in the wrong directories. Again, read the Espresso User's Guide for how to troubleshoot this. Gerardo From giannozz at nest.sns.it Wed May 25 17:14:32 2005 From: giannozz at nest.sns.it (Paolo Giannozzi) Date: Wed, 25 May 2005 15:14:32 +0000 Subject: [Pw_forum] question about the example2 In-Reply-To: <200505250453.j4P4rUfJ024794@mail.ihep.ac.cn> References: <200505250453.j4P4rUfJ024794@mail.ihep.ac.cn> Message-ID: <200505251514.32557.giannozz@nest.sns.it> On Wednesday 25 May 2005 05:15, Shaorui Sun wrote: > Why the k-points generated with automatic mode could not get > the right results, or Is there something wrong in my input files? there is nothing wrong in your input files, but there must be something wrong in the procedure you are following. I get exactly the same results (at least for X) with automatic k-points and with the list of k-points, provided they are the same (the 10 k-points you listed are the "4 4 4 1 1 1" grid). Always re-run self-consistency first, then the non scf calculation, then the phonon calculation Paolo -- Paolo Giannozzi e-mail: giannozz at nest.sns.it Scuola Normale Superiore Phone: +39/050-509876, Fax:-563513 Piazza dei Cavalieri 7 I-56126 Pisa, Italy From emenendez at macul.ciencias.uchile.cl Thu May 26 01:23:05 2005 From: emenendez at macul.ciencias.uchile.cl (Eduardo Ariel Menendez P) Date: Wed, 25 May 2005 19:23:05 -0400 (CLT) Subject: [Pw_forum] convergence of phonon Message-ID: Thank you Stefano and Nicola for your advice. I just want to close this issue, after almost three months calculating the phonons. I added random displacements to the atoms and relaxed the atomic position and the cell shape. In this way, the calculations were done without symmetry. The atomic positions and the cell shape changed a little bit, but the structure was not unstable. Then, for each cutoff (30,40, and 50 Ry), I relaxed the positions and followed a Gamma-point phonon calculation. A summary is Cutoff 30 Ry 40 Ry 50 Ry smallest omegas -63,-45,14 -57,-27,-12 -44,-32,-9 largest omegas 637,691,692 640,691,692 639,692,692 (omegas in cm^-1) Hence, I consider that I have reasonable convergence, and even the awful negative frecuencies go towards 0. Was I think that is to be learnt, is that before a phonon calculation one must relax the positions after breaking the symmetry. The bad news is that the calculation becomes much more expensive. Best regards Eduardo Message: 3 Date: Thu, 20 Jan 2005 12:43:33 +0100 From: Stefano de Gironcoli To: pw_forum at pwscf.org Subject: Re: [Pw_forum] Re: convergence of phonon Reply-To: pw_forum at pwscf.org There can be many reasons for appearance of negative (actually immaginary) frequencies in a stable system (insufficient convergence, poor k-point sampling, bad pseudopotentials, bug in the code...). But it is also possible that the calculation is telling you something about your system. Your forces are zero, most of them for symmetry reasons (judging from the fact that they are exacly zero!!!). It is possible that your system is not in stable equilibrium but in a saddle point (that can be physically relevant or due to poor k-point sampling, insufficient cut-off, bad xc-functional, bad pseudopotential, ...) Your negative fequencies are two-fold degenerate that means for sure that they do not belong to the totally symmetric irreducible representation of your crystal symmtry (the one that is preserved during relaxation). Try breaking the symmetry of your system moving the atoms along one ove the unstable eigenvectors or just add some random displacements to your coordinates and relax again . Does the system go back to the original position ? if this happens there is a problem in the phonon calculation. Or the system goes somewhere else ? If this happens your original positions actually correspond to a saddle point and the phonon code spotted it. I'm suspicious about your degauss, it looks very small to me. I would rather use a larger degauss and m-p or m-v smearing Make a plot of your DOS broadening it with FD with degauss=0.002 If your sampling is sufficiently dense the DOS will be smooth, otherwise it will wildy oscillate. best regards, Stefano de Gironcoli Eduardo Ariel Menendez P wrote: >Hello phonon community, >Thanks to nicola marzari for his advice on the parameters for phonon >calculation. >However, I have tested the convergence of the phonon >frequencies against the wavefunction cutoff, and I do not find convegence. >I am surprised that I obtain very large negative frequencies like > omega( 1) = -4.995406 [THz] = -166.629919 [cm-1] > omega( 2) = -4.995406 [THz] = -166.629919 [cm-1] > omega( 3) = -4.474172 [THz] = -149.243320 [cm-1] > omega( 4) = -4.474172 [THz] = -149.243320 [cm-1] > omega( 5) = -2.511886 [THz] = -83.788069 [cm-1] > omega( 6) = -2.511886 [THz] = -83.788069 [cm-1] > omega( 7) = 0.734339 [THz] = 24.495069 [cm-1] > omega( 8) = 1.858145 [THz] = 61.981460 [cm-1] > etc, up to omega(36) > > From mpayami at aeoi.org.ir Sat May 28 14:47:33 2005 From: mpayami at aeoi.org.ir (Mahmoud Payami) Date: Sat, 28 May 2005 17:17:33 +0430 Subject: [Pw_forum] how to specify atoms in a plane by XCrySDen? References: Message-ID: <000501c56383$6b4644c0$6e6910ac@mahmoudctpm> Dear Tone, I wonder if the feature to specify atoms in a plane by XCrySDen is implemented. I would highly appreciate if you please help to somehow manage this problem. With kindest regards, Mahmoud Payami From leoant21 at hotmail.com Tue May 31 04:34:52 2005 From: leoant21 at hotmail.com (=?gb2312?B?1cUguumx8g==?=) Date: Tue, 31 May 2005 02:34:52 +0000 Subject: [Pw_forum] How can I get a 3D Fermi Surface after PWSCF calculation In-Reply-To: <20050529053758.23961.44066.Mailman@democritos.sissa.it> Message-ID: Dear all: I have been wondering how to get a 3D/2D fermi surface after my calculation of band structure, but I don't know how to do. May someone be kind to tell me how to do? _________________________________________________________________ ?????????????? MSN Messenger: http://messenger.msn.com/cn From giannozz at nest.sns.it Tue May 31 11:45:36 2005 From: giannozz at nest.sns.it (Paolo Giannozzi) Date: Tue, 31 May 2005 09:45:36 +0000 Subject: [Pw_forum] How can I get a 3D Fermi Surface after PWSCF calculation In-Reply-To: References: Message-ID: <200505310945.36241.giannozz@nest.sns.it> On Tuesday 31 May 2005 02:34, ? ?? wrote: > I have been wondering how to get a 3D/2D fermi surface after > my calculation of band structure, but I don't know how to do. have a look at XcrySDen: http://www.xcrysden.org/ Paolo -- Paolo Giannozzi e-mail: giannozz at nest.sns.it Scuola Normale Superiore Phone: +39/050-509876, Fax:-563513 Piazza dei Cavalieri 7 I-56126 Pisa, Italy From tone.kokalj at ijs.si Tue May 31 11:00:40 2005 From: tone.kokalj at ijs.si (Tone Kokalj) Date: Tue, 31 May 2005 11:00:40 +0200 Subject: [Pw_forum] how to specify atoms in a plane by XCrySDen? In-Reply-To: <000501c56383$6b4644c0$6e6910ac@mahmoudctpm> References: <000501c56383$6b4644c0$6e6910ac@mahmoudctpm> Message-ID: <1117530040.23656.1.camel@localhost.localdomain> On Sat, 2005-05-28 at 17:17 +0430, Mahmoud Payami wrote: > Dear Tone, > > I wonder if the feature to specify atoms in a plane by XCrySDen is > implemented. > I would highly appreciate if you please help to somehow manage this problem. I do not understand what you mean by "specify atoms in a plane". Could you elaborate a bit on the description? Regrads, Tone From tone.kokalj at ijs.si Tue May 31 11:03:40 2005 From: tone.kokalj at ijs.si (Tone Kokalj) Date: Tue, 31 May 2005 11:03:40 +0200 Subject: [Pw_forum] How can I get a 3D Fermi Surface after PWSCF calculation In-Reply-To: <200505310945.36241.giannozz@nest.sns.it> References: <200505310945.36241.giannozz@nest.sns.it> Message-ID: <1117530220.23656.5.camel@localhost.localdomain> On Tue, 2005-05-31 at 09:45 +0000, Paolo Giannozzi wrote: > On Tuesday 31 May 2005 02:34, ? ?? wrote: > > > I have been wondering how to get a 3D/2D fermi surface after > > my calculation of band structure, but I don't know how to do. > > have a look at XcrySDen: http://www.xcrysden.org/ In particular, you might look at: http://www.xcrysden.org/doc/XSF.html where you should read the following sections: Specification of 2D and 3D scalar-fields and Bandgrids (visualization of Fermi surfaces) Regards, Tone From mpayami at aeoi.org.ir Tue May 31 12:50:20 2005 From: mpayami at aeoi.org.ir (Mahmoud Payami) Date: Tue, 31 May 2005 15:20:20 +0430 Subject: [Pw_forum] how to specify atoms in a plane by XCrySDen? References: <000501c56383$6b4644c0$6e6910ac@mahmoudctpm> <1117530040.23656.1.camel@localhost.localdomain> Message-ID: <000001c565d4$c7326d10$6e6910ac@mahmoudctpm> Dear Tone, I just mean that specifying 3 non-collinear atoms defines a plane that include lots of atoms. I just need somehow to highlight those atoms lying on this surface. Best regards, mahmoud > > > > I wonder if the feature to specify atoms in a plane by XCrySDen is > > implemented. > > I would highly appreciate if you please help to somehow manage this problem. > > I do not understand what you mean by "specify atoms in a plane". Could > you > elaborate a bit on the description? > > Regrads, Tone > > _______________________________________________ > Pw_forum mailing list > Pw_forum at pwscf.org > http://www.democritos.it/mailman/listinfo/pw_forum > > From tone.kokalj at ijs.si Tue May 31 14:07:29 2005 From: tone.kokalj at ijs.si (Tone Kokalj) Date: Tue, 31 May 2005 14:07:29 +0200 Subject: [Pw_forum] how to specify atoms in a plane by XCrySDen? In-Reply-To: <000001c565d4$c7326d10$6e6910ac@mahmoudctpm> References: <000501c56383$6b4644c0$6e6910ac@mahmoudctpm> <1117530040.23656.1.camel@localhost.localdomain> <000001c565d4$c7326d10$6e6910ac@mahmoudctpm> Message-ID: <1117541249.3044.19.camel@localhost.localdomain> On Tue, 2005-05-31 at 15:20 +0430, Mahmoud Payami wrote: > Dear Tone, > I just mean that specifying 3 non-collinear atoms defines a plane that > include lots of atoms. I just need somehow to highlight those atoms lying on > this surface. If your system is a surface (slab), you can use the menu "Tools-->Color Scheme", and play with the "Slab colors" options, because in this case you probably want to highlight atoms lying in plane parallel to xy plane. Otherwise, if the plane of interest is not one of xy, xz, or yz then you edit the structure file (i.e. XSF file), and replace atoms of interest with some other "atomic species", and then you color these "other" atomic species accordingly (Modify-->Atomic color). Best regards, Tone From emenendez at macul.ciencias.uchile.cl Tue May 31 22:40:24 2005 From: emenendez at macul.ciencias.uchile.cl (Eduardo Ariel Menendez P) Date: Tue, 31 May 2005 16:40:24 -0400 (CLT) Subject: [Pw_forum] pseudopotential generation with atomic Message-ID: Hello, I have been trying to generate a pseudopotential for Cd using atomic of Espreso 2.1.2. However I have error messages, and cannot obtain the pseudopotential. Input file &input title='Cd', zed=48., rel=1, iswitch=3, dft='PBE', nld=1, rlderiv=2.5 eminld=-1.0, emaxld=1.0, deld=0.05, / 11 1S 1 0 2.0 1 2S 2 0 2.0 1 2P 2 1 6.0 1 3S 3 0 2.0 1 3P 3 1 6.0 1 3D 3 2 10.0 1 4S 4 0 2.0 1 4P 4 1 6.0 1 4D 4 2 10.0 1 5S 5 0 2.0 1 5P 5 1 0.0 1 &test pseudotype=1, nconf=1, / 3 4D 4 2 10.00 0.00 1.6 2.5 5S 5 0 2.00 0.00 2.4 2.5 5P 5 1 0.00 0.0 2.0 2.5 &inputp lloc=1, file_pseudopw='Cd.TM', zval=12.0, tm=.true. / 3 4D 4 2 10.00 0.0 1.6 2.5 5S 5 0 2.00 0.0 2.4 2.5 5P 5 1 0.00 0.0 2.4 2.5 Output: program ld1 starts. version 20-May-04 today is 26May2005 at 19:17:29 -------------------- All-electron run ------------------------------ Cd scalar relativistic calculation atomic number is 48.00 dft =PBE lsd =0 sic =0 latt =0 beta=0.20 tr2=1.0E-14 mesh =1239 r(mesh) = 99.86297 xmin = -7.00 dx = 0.01250 n l nl e(Ryd) e(Ha) e(eV) 1 0 1S 1( 2.00) -1949.6083 -974.8041 -26525.9804 2 0 2S 1( 2.00) -289.4415 -144.7208 -3938.0838 2 1 2P 1( 6.00) -259.7080 -129.8540 -3533.5349 3 0 3S 1( 2.00) -53.9458 -26.9729 -733.9754 3 1 3P 1( 6.00) -44.1926 -22.0963 -601.2753 3 2 3D 1(10.00) -28.9318 -14.4659 -393.6408 4 0 4S 1( 2.00) -7.7848 -3.8924 -105.9183 4 1 4P 1( 6.00) -4.9220 -2.4610 -66.9676 4 2 4D 1(10.00) -0.8624 -0.4312 -11.7330 5 0 5S 1( 2.00) -0.4159 -0.2080 -5.6593 5 1 5P 1( 0.00) -0.0870 -0.0435 -1.1835 eps = 8.7E-15 iter = 32 Etot = -11189.313006 Ry, -5594.656503 Ha, -152239.554894 eV Ekin = 11643.488224 Ry, 5821.744112 Ha, 158418.972081 eV Encl = -27054.240915 Ry, -13527.120457 Ha, -368094.591036 eV Eh = 4530.042716 Ry, 2265.021358 Ha, 61634.855179 eV Exc = -308.603031 Ry, -154.301515 Ha, -4198.791118 eV Evxt = 0.000000 Ry, 0.000000 Ha, 0.000000 eV Epseu= 0.000000 Ry, 0.000000 Ha, 0.000000 eV normalization and overlap integrals s(1S/1S) = 1.000000 = 0.0304 = 0.0012 r(max) = 0.0196 s(1S/2S) = -0.012089 s(1S/3S) = -0.005018 s(1S/4S) = -0.002184 s(1S/5S) = -0.000592 s(2S/2S) = 1.000000 = 0.1317 = 0.0204 r(max) = 0.1112 s(2S/3S) = -0.003067 s(2S/4S) = -0.001287 s(2S/5S) = -0.000347 s(2P/2P) = 1.000000 = 0.1149 = 0.0161 r(max) = 0.0888 s(2P/3P) = -0.002505 s(2P/4P) = -0.000969 s(2P/5P) = -0.000165 s(3S/3S) = 1.000000 = 0.3583 = 0.1468 r(max) = 0.3259 s(3S/4S) = -0.000854 s(3S/5S) = -0.000226 s(3P/3P) = 1.000000 = 0.3571 = 0.1480 r(max) = 0.3178 s(3P/4P) = -0.000709 s(3P/5P) = -0.000118 s(3D/3D) = 1.000000 = 0.3347 = 0.1333 r(max) = 0.2668 s(3D/4D) = -0.000427 s(4S/4S) = 1.000000 = 0.8791 = 0.8757 r(max) = 0.7916 s(4S/5S) = -0.000136 s(4P/4P) = 1.000000 = 0.9602 = 1.0567 r(max) = 0.8427 s(4P/5P) = -0.000070 s(4D/4D) = 1.000000 = 1.2895 = 2.0329 r(max) = 0.9790 s(5S/5S) = 1.000000 = 2.8995 = 9.7602 r(max) = 2.3486 s(5P/5P) = 1.000000 = 4.5626 = 25.1924 r(max) = 3.3328 -------------------- End of All-electron run ---------------------- --------------- Generating NC pseudopotential --------------- Generating local potential, lloc= 1 Wfc 4D rcut= 1.600 Using Troullier-Martins method This function has 0 nodes for 0 < r < 1.614 Wfc-us 4D rcutus= 2.500 Estimated cut-off energy= 19.82 Ry Wfc 5S rcut= 2.400 Using Troullier-Martins method This function has 0 nodes for 0 < r < 2.408 Wfc-us 5S rcutus= 2.500 Estimated cut-off energy= 7.42 Ry Try bisec 4.261671198721149E-004 4.261671198721149E-004 solution not found in ascheqps Try bisec -0.937906518005850 -1.754805746840686E-004 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% from ascheqps : error # 1 too many try %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% stopping ... Thanks Best regards Eduardo From giannozz at nest.sns.it Tue May 31 23:09:04 2005 From: giannozz at nest.sns.it (Paolo Giannozzi) Date: Tue, 31 May 2005 23:09:04 +0200 Subject: [Pw_forum] pseudopotential generation with atomic In-Reply-To: References: Message-ID: <200505312309.04845.giannozz@nest.sns.it> On Tuesday 31 May 2005 22:40, Eduardo Ariel Menendez P wrote: > pseudotype=1, i.e. norm conserving, semilocal form, one projector and one matching radius rc per angular momentum channel > 4D 4 2 10.00 0.00 1.6 2.5 > 5S 5 0 2.00 0.00 2.4 2.5 > 5P 5 1 0.00 0.0 2.0 2.5 you have a matching radius for ultrasoft pseudization, rc(us) =2.5, that is larger than for norm-conserving pseudization, rc(nc)=1.6, 2.4, 2.0 respectively. They should be the same. Unfortunately if they aren't you may get incorrect results (Xinjie from Rutgers told me about this problem some time ago). It will be fixed in the next version. Paolo