From arvindajoy at gmail.com Mon Jun 8 07:15:22 2009 From: arvindajoy at gmail.com (Arvind Ajoy) Date: Mon, 8 Jun 2009 10:45:22 +0530 Subject: [xcrysden] Help regarding cutting planes and crystals Message-ID: Dear Users I wish to look at surfaces generated by cutting a Silicon crystal with various planes. For example, I would like to create images like the one listed at http://www.xcrysden.org/Pictures.html, specifically http://www.xcrysden.org/img/rh_fcc_111plane-200.png and http://www.xcrysden.org/img/Rh111_top-200.png. I have gone through the documentation and the mailing list archives, but could not figure out a possible means to do what I intend. Look forward to a solution. Regards Arvind ================================================= Dept of Electrical Engineering Indian Institute of Technology Madras -------------- next part -------------- An HTML attachment was scrubbed... URL: http://www.democritos.it/pipermail/xcrysden/attachments/20090608/41c09d0a/attachment.htm From tone.kokalj at ijs.si Mon Jun 8 11:12:11 2009 From: tone.kokalj at ijs.si (Tone Kokalj) Date: Mon, 08 Jun 2009 11:12:11 +0200 Subject: [xcrysden] Help regarding cutting planes and crystals In-Reply-To: References: Message-ID: <1244452331.27865.5.camel@walk.ijs.si> On Mon, 2009-06-08 at 10:45 +0530, Arvind Ajoy wrote: > Dear Users > > I wish to look at surfaces generated by cutting a Silicon crystal with > various planes. > For example, I would like to create images like the one listed at > http://www.xcrysden.org/Pictures.html, > specifically http://www.xcrysden.org/img/rh_fcc_111plane-200.png > and http://www.xcrysden.org/img/Rh111_top-200.png. > > I have gone through the documentation and the mailing list archives, > but could > not figure out a possible means to do what I intend. You will have to provide the corresponding surface (i.e. slab) structure, and then xcrysden will display it, unless you have a crystal program (http://www.crystal.unito.it/). In the latter case, you may start with the Si bulk structure and use the xcrysden's AdvGeom menu, where you can specify the Miller indices, and then the surface structure will be generated. Regards, Tone -- Anton Kokalj J. Stefan Institute, Jamova 39, 1000 Ljubljana, Slovenia (tel: +386-1-477-3523 // fax:+386-1-477-3822) Please, if possible, avoid sending me Word or PowerPoint attachments. See: http://www.gnu.org/philosophy/no-word-attachments.html From jibiaoli at gmail.com Fri Jun 12 14:03:18 2009 From: jibiaoli at gmail.com (Clark Lee) Date: Fri, 12 Jun 2009 20:03:18 +0800 Subject: [xcrysden] XCrySDen Digest, Vol 18, Issue 1 In-Reply-To: References: Message-ID: Dear Arvind, The xcrysden software itself can not creat the surface plane, it displays specified surface modeled and calculated in codes such as pwscf, crystal etc. On 6/8/09, xcrysden-request at democritos.it wrote: > > Send XCrySDen mailing list submissions to > xcrysden at democritos.it > > To subscribe or unsubscribe via the World Wide Web, visit > http://www.democritos.it/mailman/listinfo/xcrysden > or, via email, send a message with subject or body 'help' to > xcrysden-request at democritos.it > > You can reach the person managing the list at > xcrysden-owner at democritos.it > > When replying, please edit your Subject line so it is more specific > than "Re: Contents of XCrySDen digest..." > > > Today's Topics: > > 1. Help regarding cutting planes and crystals (Arvind Ajoy) > > > ---------------------------------------------------------------------- > > Message: 1 > Date: Mon, 8 Jun 2009 10:45:22 +0530 > From: Arvind Ajoy > Subject: [xcrysden] Help regarding cutting planes and crystals > To: xcrysden at democritos.it > Message-ID: > > Content-Type: text/plain; charset="iso-8859-1" > > Dear Users > > I wish to look at surfaces generated by cutting a Silicon crystal with > various planes. > For example, I would like to create images like the one listed at > http://www.xcrysden.org/Pictures.html, > specifically http://www.xcrysden.org/img/rh_fcc_111plane-200.png > and http://www.xcrysden.org/img/Rh111_top-200.png. > > I have gone through the documentation and the mailing list archives, but > could > not figure out a possible means to do what I intend. > > Look forward to a solution. > > Regards > > Arvind > ================================================= > Dept of Electrical Engineering > Indian Institute of Technology Madras > -------------- next part -------------- > An HTML attachment was scrubbed... > URL: > http://www.democritos.it/pipermail/xcrysden/attachments/20090608/41c09d0a/attachment-0001.htm > > ------------------------------ > > _______________________________________________ > XCrySDen mailing list > XCrySDen at democritos.it > http://www.democritos.it/mailman/listinfo/xcrysden > > > End of XCrySDen Digest, Vol 18, Issue 1 > *************************************** > -- Yours sincerely, Jibiao Li State Key Lab of Corrosion and Protection (SKLCP) Institute of Metal Research (IMR) Chinese Academy of Sciences (CAS), China Phone: 024-23971339 Email: jibiaoli at gmail.com -------------- next part -------------- An HTML attachment was scrubbed... URL: http://www.democritos.it/pipermail/xcrysden/attachments/20090612/f66c2762/attachment.htm From hana.milani at yahoo.com Thu Jun 18 16:31:39 2009 From: hana.milani at yahoo.com (Hana Milani) Date: Thu, 18 Jun 2009 07:31:39 -0700 (PDT) Subject: [xcrysden] XCrySDen Digest, Vol 18, Issue 2 In-Reply-To: References: Message-ID: <385879.92534.qm@web110809.mail.gq1.yahoo.com> Hi, I read the section about k path selection and the file extenstions that are recognized by it. But, please let me know how I can generate *.kpf or *.d3, while I work in Siesta, Abinit and Crystal? Regards, Hana -------------- next part -------------- An HTML attachment was scrubbed... URL: http://www.democritos.it/pipermail/xcrysden/attachments/20090618/eec87bdd/attachment.htm From tone.kokalj at ijs.si Thu Jun 18 18:03:28 2009 From: tone.kokalj at ijs.si (Tone Kokalj) Date: Thu, 18 Jun 2009 18:03:28 +0200 Subject: [xcrysden] XCrySDen Digest, Vol 18, Issue 2 In-Reply-To: <385879.92534.qm@web110809.mail.gq1.yahoo.com> References: <385879.92534.qm@web110809.mail.gq1.yahoo.com> Message-ID: <1245341008.17430.38.camel@walk.ijs.si> On Thu, 2009-06-18 at 07:31 -0700, Hana Milani wrote: > Hi, > > I read the section about k path selection and the file extenstions > that are recognized by it. But, please let me know how I can generate > *.kpf or *.d3, while I work in Siesta, Abinit and Crystal? Very easy, tough the way it works is very implicit. It is determined by the file extension, that has to be explicitly entered in the filename, in particular: kpath.kpf -- its a general type of file where selected kpoints are printed in crystal coordinates (reciprocal basis) + explanation kpatk.d3 -- file suited for CRYSTAL program kpath.pwscf --file formatted for PWscf If you would like it for Abinit or Sieste, see each of the three files and select the one that suit you most. Then write a simple converter that will convert to proper format. Regards, Tone -- Anton Kokalj J. Stefan Institute, Jamova 39, 1000 Ljubljana, Slovenia (tel: +386-1-477-3523 // fax:+386-1-477-3822) Please, if possible, avoid sending me Word or PowerPoint attachments. See: http://www.gnu.org/philosophy/no-word-attachments.html From colonel.sreekar at gmail.com Sun Jun 21 23:07:18 2009 From: colonel.sreekar at gmail.com (sreekar guddeti) Date: Mon, 22 Jun 2009 02:37:18 +0530 Subject: [xcrysden] installation help Message-ID: hello, i downloaded the xcrysden source package with external libraries (TCL +TK + Mesa) included and for installation i created a make.sys file as instructed(but i m not sure if i did this the right way) and then for make install the configuration utility pops in console finally after sourcing the profile i type xcrysden in console i get /home/fubar/Desktop/programming/XCrySDen-1.4.1s/xcrysden: 200: /home/fubar/Desktop/programming/XCrySDen-1.4.1s/bin/xcrys: not found i looked up the bin directory and nothing was there in it... could anyone help out plz. thanks in advance -- Sreekar Guddeti IIT Bombay -------------- next part -------------- An HTML attachment was scrubbed... URL: http://www.democritos.it/pipermail/xcrysden/attachments/20090622/0318a900/attachment.htm From sebastijan.peljhan at ijs.si Mon Jun 22 09:16:07 2009 From: sebastijan.peljhan at ijs.si (Sebastijan Peljhan) Date: Mon, 22 Jun 2009 09:16:07 +0200 Subject: [xcrysden] installation help In-Reply-To: References: Message-ID: <1245654967.5006.3.camel@yunnan.ijs.si> On Mon, 2009-06-22 at 02:37 +0530, sreekar guddeti wrote: > hello, > i downloaded the xcrysden source package with external libraries (TCL > +TK + Mesa) included and for installation i created a make.sys file as > instructed(but i m not sure if i did this the right way) and then for > > > make install You should try "make all" instead. Sebastijan > the configuration utility pops in console > finally after sourcing the profile > i type xcrysden in console i get > > /home/fubar/Desktop/programming/XCrySDen-1.4.1s/xcrysden: > 200: /home/fubar/Desktop/programming/XCrySDen-1.4.1s/bin/xcrys: not > found > > i looked up the bin directory and nothing was there in it... could > anyone help out plz. > thanks in advance > > > -- > Sreekar Guddeti > IIT Bombay > > _______________________________________________ > XCrySDen mailing list > XCrySDen at democritos.it > http://www.democritos.it/mailman/listinfo/xcrysden -- Sebastijan Peljhan, J. Stefan Institute, Jamova 39, 1000 Ljubljana, Slovenia email: sebastijan.peljhan at ijs.si phone: +386-1-477-3523 fax: +386-1-477-3822 From paulatto at sissa.it Mon Jun 22 09:40:30 2009 From: paulatto at sissa.it (Lorenzo Paulatto) Date: Mon, 22 Jun 2009 09:40:30 +0200 (CEST) Subject: [xcrysden] installation help In-Reply-To: References: Message-ID: <46166.78.12.163.46.1245656430.squirrel@webmail.sissa.it> On Sun, June 21, 2009 23:07, sreekar guddeti wrote: > xcrysden source package with external libraries (TCL +TK + Mesa) Dear Sreekar, I would strongly advise against compiling XCD yourself; I consider mtself to be an experienced developer, still it took me one full day to compiler XCD correctly the first time, due to the number of complex libraries it uses. Nevertheless, if you really want to compile it make sure you have downloaded the 1.6 pre-release version (which is remarkably stable) and send us a copy of the make.sys file, so we can check it for errors. Finally, please note that installing the 1.6 binary shared-libraries version is extremely simple, has no significant drawback compared to compiling the source yourself and may actually use your video card's 3D acceleration more effectively that compiling with internal libraries. best regards -- Lorenzo Paulatto SISSA & DEMOCRITOS (Trieste) phone: +39 040 3787 511 skype: paulatz www: http://people.sissa.it/~paulatto/ ---------------------------------------------------------------- SISSA Webmail https://webmail.sissa.it/ Powered by SquirrelMail http://www.squirrelmail.org/ From sebastijan.peljhan at ijs.si Mon Jun 22 09:16:07 2009 From: sebastijan.peljhan at ijs.si (Sebastijan Peljhan) Date: Mon, 22 Jun 2009 09:16:07 +0200 Subject: [xcrysden] installation help In-Reply-To: References: Message-ID: <1245654967.5006.3.camel@yunnan.ijs.si> On Mon, 2009-06-22 at 02:37 +0530, sreekar guddeti wrote: > hello, > i downloaded the xcrysden source package with external libraries (TCL > +TK + Mesa) included and for installation i created a make.sys file as > instructed(but i m not sure if i did this the right way) and then for > > > make install You should try "make all" instead. Sebastijan > the configuration utility pops in console > finally after sourcing the profile > i type xcrysden in console i get > > /home/fubar/Desktop/programming/XCrySDen-1.4.1s/xcrysden: > 200: /home/fubar/Desktop/programming/XCrySDen-1.4.1s/bin/xcrys: not > found > > i looked up the bin directory and nothing was there in it... could > anyone help out plz. > thanks in advance > > > -- > Sreekar Guddeti > IIT Bombay > > _______________________________________________ > XCrySDen mailing list > XCrySDen at democritos.it > http://www.democritos.it/mailman/listinfo/xcrysden -- Sebastijan Peljhan, J. Stefan Institute, Jamova 39, 1000 Ljubljana, Slovenia email: sebastijan.peljhan at ijs.si phone: +386-1-477-3523 fax: +386-1-477-3822 From sebastijan.peljhan at ijs.si Mon Jun 22 09:16:07 2009 From: sebastijan.peljhan at ijs.si (Sebastijan Peljhan) Date: Mon, 22 Jun 2009 09:16:07 +0200 Subject: [xcrysden] installation help In-Reply-To: References: Message-ID: <1245654967.5006.3.camel@yunnan.ijs.si> On Mon, 2009-06-22 at 02:37 +0530, sreekar guddeti wrote: > hello, > i downloaded the xcrysden source package with external libraries (TCL > +TK + Mesa) included and for installation i created a make.sys file as > instructed(but i m not sure if i did this the right way) and then for > > > make install You should try "make all" instead. Sebastijan > the configuration utility pops in console > finally after sourcing the profile > i type xcrysden in console i get > > /home/fubar/Desktop/programming/XCrySDen-1.4.1s/xcrysden: > 200: /home/fubar/Desktop/programming/XCrySDen-1.4.1s/bin/xcrys: not > found > > i looked up the bin directory and nothing was there in it... could > anyone help out plz. > thanks in advance > > > -- > Sreekar Guddeti > IIT Bombay > > _______________________________________________ > XCrySDen mailing list > XCrySDen at democritos.it > http://www.democritos.it/mailman/listinfo/xcrysden -- Sebastijan Peljhan, J. Stefan Institute, Jamova 39, 1000 Ljubljana, Slovenia email: sebastijan.peljhan at ijs.si phone: +386-1-477-3523 fax: +386-1-477-3822 From sebastijan.peljhan at ijs.si Mon Jun 22 09:16:07 2009 From: sebastijan.peljhan at ijs.si (Sebastijan Peljhan) Date: Mon, 22 Jun 2009 09:16:07 +0200 Subject: [xcrysden] installation help In-Reply-To: References: Message-ID: <1245654967.5006.3.camel@yunnan.ijs.si> On Mon, 2009-06-22 at 02:37 +0530, sreekar guddeti wrote: > hello, > i downloaded the xcrysden source package with external libraries (TCL > +TK + Mesa) included and for installation i created a make.sys file as > instructed(but i m not sure if i did this the right way) and then for > > > make install You should try "make all" instead. Sebastijan > the configuration utility pops in console > finally after sourcing the profile > i type xcrysden in console i get > > /home/fubar/Desktop/programming/XCrySDen-1.4.1s/xcrysden: > 200: /home/fubar/Desktop/programming/XCrySDen-1.4.1s/bin/xcrys: not > found > > i looked up the bin directory and nothing was there in it... could > anyone help out plz. > thanks in advance > > > -- > Sreekar Guddeti > IIT Bombay > > _______________________________________________ > XCrySDen mailing list > XCrySDen at democritos.it > http://www.democritos.it/mailman/listinfo/xcrysden -- Sebastijan Peljhan, J. Stefan Institute, Jamova 39, 1000 Ljubljana, Slovenia email: sebastijan.peljhan at ijs.si phone: +386-1-477-3523 fax: +386-1-477-3822 From zbayyari at rocketmail.com Wed Jun 24 13:28:35 2009 From: zbayyari at rocketmail.com (Zuheir Elbayyari) Date: Wed, 24 Jun 2009 04:28:35 -0700 (PDT) Subject: [xcrysden] XCrySDen-1.4.1bin-shared/scripts/xcLib.sh line 14, 15, and ... Message-ID: <951267.3220.qm@web54506.mail.re2.yahoo.com> Hi all, ?I am trying to install XCrySDen-1.4.1bin-shared on my notebook Dell Latitude D500 with cygwin env. when I run?xcrysden at the prompt Owner at newton~$ i get the following errors attached in the log file generated with the command $ .xcrysden -T >& log any solution please will be appreciated. Kind regards. ? ? Zuheir El-bayyari (Ph.D) ? -------------- next part -------------- An HTML attachment was scrubbed... URL: http://www.democritos.it/pipermail/xcrysden/attachments/20090624/7d71460b/attachment.htm -------------- next part -------------- An embedded and charset-unspecified text was scrubbed... Name: log Url: http://www.democritos.it/pipermail/xcrysden/attachments/20090624/7d71460b/attachment.txt From a.nourmohammadi at yahoo.com Sun Jun 28 09:38:20 2009 From: a.nourmohammadi at yahoo.com (Amene Nouri) Date: Sun, 28 Jun 2009 00:38:20 -0700 (PDT) Subject: [xcrysden] point gruop Message-ID: <757829.83535.qm@web59406.mail.ac4.yahoo.com> hello I have a wien2k struct file how can I find it's point group and space group? thanks -------------- next part -------------- An HTML attachment was scrubbed... URL: http://www.democritos.it/pipermail/xcrysden/attachments/20090628/544e3a36/attachment.htm