From zucco at dipteris.unige.it  Wed Aug  3 10:32:03 2011
From: zucco at dipteris.unige.it (Marino Vetuschi Zuccolini)
Date: Wed, 3 Aug 2011 10:32:03 +0200
Subject: [xcrysden] Success: Building XCD 1.5.24 with shared libs on OS X
In-Reply-To: <CAD6+qQZCpsHQ-ug+9mpRhqTMgUkOyZsO_SkCu5=3Xme+CxPNsg@mail.gmail.com>
References: <4DDBA9AA-AAD0-4ED1-B86F-9A1B33CA30AD@Mines.EDU>
	<CAD6+qQZCpsHQ-ug+9mpRhqTMgUkOyZsO_SkCu5=3Xme+CxPNsg@mail.gmail.com>
Message-ID: <5AC75EF7-86F0-44A1-9407-D3761E1BCDBE@dipteris.unige.it>

Thanks to David and Tone. It is compiled so smoothly...

m.


> 
> 2011/7/25 David M. Wood <dmwood at mines.edu>
> Howdy all!
> 
> After long travails, I have succeeded in building a functioning version of 1.5.24.  It is somewhat disturbing how difficult this has been.  (It appears to have succeeded today only because of new Mesa and OpenGL libraries from MacPorts.)
> 
> I attempt to give here a quick prescription for building xcd 1.5.24 using external libraries provided by the MacPorts system: http://www.macports.org/ . [Remember why this is potentially useful: you can use, e.g., libraries which are tweaked for your particular architecture; macports is also well maintained.]  Because this process has been spread out over many weeks, I undoubtedly have forgotten to specify something; please let me know if so.  I built this under Mac OS X 10.6.8 (Snow Leopard); I'll follow up if things are significantly different under Lion (10.7).
> 
> 0.  Make sure you have Xcode and relevant Developer (e.g, X11) packages installed
> 
> 1. Install a barebones MacPort tree (again, from www.macports.org)
> 
> 2. Install, in no particular order (port will take care of dependencies)
> 
> atlas
> fftw-3
> gfortran 4.5 [which will end up being named gfortran-mp-4.5 in /opt/local/bin], although earlier versions (e.g., 4.3) worked for me.  This should automatically install gcc.
> mesa
> meschach
> tcl
> tk
> 
> NB: port install gcc45 +variant:gfortran is an EXAMPLE of how to install a variant of a particular port package.
> 
> Each install will provoke a cascade of other downloads and install; be patient.
> 
> 3. Use the Make.sys file below
> 
> 4. Type "make all"
> 
> 5. Test on .xsf or .xcrysden files
> 
> Carefully inspect the directories and libraries mentioned in Make.sys; if you don't have the ones mentioned, you may not have installed the corresponding MacPorts packages.
> 
> =========BEGINNING OF Make.sys==============
> 
> MAKE = make
> 
> CC     = /opt/local/bin/gcc-mp-4.5
> #Need the have-no-getline
> CFLAGS = -O2 -m64 -L/opt/local/lib -DXC_HAVE_NO_GETLINE
> MATH   = -lm
> 
> FC     = /opt/local/bin/gfortran-mp-4.5
> FFLAGS = -O2 -m64 -L/opt/local/lib
> #DMW: See notes for CFLAGS above
> 
> #X
> #port libs
> X_LIB     = -L/opt/local/lib -lXmu -lX11 -lXext
> X_INCDIR  = -I/opt/local/include
> 
> # If you want to use your own libraries and include files,
> # then set *_LIB and *_INCDIR variables below accordingly:
> #
> #------------------------------------------------------------------------
> 
> COMPILE_TCLTK = no
> COMPILE_MESA  = no
> 
> #
> # Libraries
> #
> TK_LIB      = -L/opt/local/lib -ltk8.5
> TCL_LIB     = -L/opt/local/lib -ltcl8.5
> GLU_LIB     = -L/opt/local/lib -lGLU
> GL_LIB      = -L/opt/local/lib -lGL
> 
> #DMW additions
> MESCHACH_LIB = -L/opt/local/lib -lmeschach
> FFTW3_LIB = -L/opt/local/lib -lfftw3
> LDLIB = -L/opt/local/lib
> 
> #
> # Include directories
> #
> 
> #blank fine
> TCL_INCDIR  =
> TK_INCDIR   =
> GL_INCDIR   =
> 
> #DMW additions
> MESCHACH_INCDIR = -I/opt/local/include/meschach
> FFTW3_INCDIR = -I/opt/local/include
> 
> =========END OF Make.sys==============
> 
> I readily made a XCrySDen-1.5.24-bin-shared.tar.gz file but assume this won't work unless boatloads of libraries (above) are present.
> Hope this helps!
> 
> David M. Wood, Dept. of Physics, Colorado School of Mines, Golden, CO 80401
> Phone: (303) 273-3853; Fax: (303) 273-3919
> 
> _______________________________________________
> XCrySDen mailing list
> XCrySDen at democritos.it
> http://www.democritos.it/mailman/listinfo/xcrysden
> 
> 
> _______________________________________________
> XCrySDen mailing list
> XCrySDen at democritos.it
> http://www.democritos.it/mailman/listinfo/xcrysden



*******************************************************
Marino Vetuschi Zuccolini
zucco at dipteris.unige.it
Researcher / Geochemist
Laboratory of Geochemistry

DIPartimento per lo studio della TErra e delle sue RISorse - Universit?  di Genova
Tel. ++39 010 3538136 Fax. ++39 010 352169
Corso Europa 26, 16132 - Genova - Italy


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From tone.kokalj at ijs.si  Wed Aug  3 10:56:51 2011
From: tone.kokalj at ijs.si (Tone Kokalj)
Date: Wed, 03 Aug 2011 10:56:51 +0200
Subject: [xcrysden] Success: Building XCD 1.5.24 with shared libs on OS X
In-Reply-To: <5AC75EF7-86F0-44A1-9407-D3761E1BCDBE@dipteris.unige.it>
References: <4DDBA9AA-AAD0-4ED1-B86F-9A1B33CA30AD@Mines.EDU>
	<CAD6+qQZCpsHQ-ug+9mpRhqTMgUkOyZsO_SkCu5=3Xme+CxPNsg@mail.gmail.com>
	<5AC75EF7-86F0-44A1-9407-D3761E1BCDBE@dipteris.unige.it>
Message-ID: <1312361811.3969.3.camel@catalyst.ijs.si>

On Wed, 2011-08-03 at 10:32 +0200, Marino Vetuschi Zuccolini wrote:
> Thanks to David and Tone. It is compiled so smoothly...

Very good!

Would any of those of you who have successfully built/compiled the mac
os x xcrysden, create a semishared binary package to be put on the
xcrysden download page, so that those users, which are not so skillful
in compilation issues may download it.

Some instructions on how to build a semishared version were posted on
the xcrysden mailing list on 26 July.

Regards,
-- 
Anton Kokalj
J. Stefan Institute, Jamova 39, 1000 Ljubljana, Slovenia 
(tel: +386-1-477-3523 // fax:+386-1-477-3822)

Please, if possible, avoid sending me Word or PowerPoint attachments.
See:  http://www.gnu.org/philosophy/no-word-attachments.html


From zucco at dipteris.unige.it  Fri Aug  5 18:50:30 2011
From: zucco at dipteris.unige.it (Marino Vetuschi Zuccolini)
Date: Fri, 5 Aug 2011 18:50:30 +0200
Subject: [xcrysden] Success: Building XCD 1.5.24 with shared libs on OS X
In-Reply-To: <1312361811.3969.3.camel@catalyst.ijs.si>
References: <4DDBA9AA-AAD0-4ED1-B86F-9A1B33CA30AD@Mines.EDU>
	<CAD6+qQZCpsHQ-ug+9mpRhqTMgUkOyZsO_SkCu5=3Xme+CxPNsg@mail.gmail.com>
	<5AC75EF7-86F0-44A1-9407-D3761E1BCDBE@dipteris.unige.it>
	<1312361811.3969.3.camel@catalyst.ijs.si>
Message-ID: <C5243E37-40C6-46A2-AAF7-815C4689A8F5@dipteris.unige.it>

Tone,
as reported by Paulo, I have a very light flickering on the space dedicated to the cell structure in XCrysDen window. I'm trying to eliminate this noisy effect, only noisy for my MacBook (Leopard Snow). If I'll successfully resolve the problem I'll try to create a semi-shared version.
Sorry...

m.

On 3 Aug 2011, at 10:56, Tone Kokalj wrote:

> On Wed, 2011-08-03 at 10:32 +0200, Marino Vetuschi Zuccolini wrote:
>> Thanks to David and Tone. It is compiled so smoothly...
> 
> Very good!
> 
> Would any of those of you who have successfully built/compiled the mac
> os x xcrysden, create a semishared binary package to be put on the
> xcrysden download page, so that those users, which are not so skillful
> in compilation issues may download it.
> 
> Some instructions on how to build a semishared version were posted on
> the xcrysden mailing list on 26 July.
> 
> Regards,
> -- 
> Anton Kokalj
> J. Stefan Institute, Jamova 39, 1000 Ljubljana, Slovenia 
> (tel: +386-1-477-3523 // fax:+386-1-477-3822)
> 
> Please, if possible, avoid sending me Word or PowerPoint attachments.
> See:  http://www.gnu.org/philosophy/no-word-attachments.html
> 
> _______________________________________________
> XCrySDen mailing list
> XCrySDen at democritos.it
> http://www.democritos.it/mailman/listinfo/xcrysden



*******************************************************
Marino Vetuschi Zuccolini
zucco at dipteris.unige.it
Researcher / Geochemist
Laboratory of Geochemistry

DIPartimento per lo studio della TErra e delle sue RISorse - Universit?  di Genova
Tel. ++39 010 3538136 Fax. ++39 010 352169
Corso Europa 26, 16132 - Genova - Italy



From Trinh.Vo at jpl.nasa.gov  Tue Aug  9 02:53:44 2011
From: Trinh.Vo at jpl.nasa.gov (Vo, Trinh (388C))
Date: Mon, 8 Aug 2011 17:53:44 -0700
Subject: [xcrysden] Link for download XCrysden-1.5 is broken
Message-ID: <CA65D328.1C6B%Trinh.Vo@jpl.nasa.gov>

Dear All,

I tried to download Xcrysden binary packages for Mac OS X, but the link seemed to be broken.  Is there another way that I can obtain the package from other link?

Thank you,

Trinh

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From member at linkedin.com  Tue Aug  9 12:44:25 2011
From: member at linkedin.com (Peter Pan via LinkedIn)
Date: Tue, 9 Aug 2011 10:44:25 +0000 (UTC)
Subject: [xcrysden] =?utf-8?q?Fa=C3=A7a_parte_da_minha_rede_no_LinkedIn?=
Message-ID: <5946450.7944854.1312886665718.JavaMail.app@ela4-app0135.prod>

LinkedIn
------------




    
    
    
    
      Peter Pan indicou voc? como um amigo ou amiga
      
    
      
    
    
  
------------------------------------------

I'd like to add you to my professional network.

- Peter

Aceitar convite de Peter Pan
http://www.linkedin.com/e/-fe5rcs-gr4qtmnf-l/V2kbc-S-ecaYaqU8y2MQlJBQAcaYZU7r_FU/blk/I108431092_125/6lColZJrmZznQNdhjRQnOpBtn9QfmhBt71BoSd1p65Lr6lOfPkOclYOej0NcPgUc359bTBRbmtEdPoPbPcQdzwNcz8Me3cLrCBxbOYWrSlI/EML_comm_afe/

Visualizar convite de Peter Pan
http://www.linkedin.com/e/-fe5rcs-gr4qtmnf-l/V2kbc-S-ecaYaqU8y2MQlJBQAcaYZU7r_FU/blk/I108431092_125/dj8NnP8Vc34Pd3wMckALqnpPbOYWrSlI/svi/
------------------------------------------

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http://www.linkedin.com/
 
-- 
(c) 2011, LinkedIn Corporation
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From bamideleibrahim at yahoo.com  Thu Aug 25 06:20:42 2011
From: bamideleibrahim at yahoo.com (bamidele ibrahim)
Date: Wed, 24 Aug 2011 21:20:42 -0700 (PDT)
Subject: [xcrysden] installation error
Message-ID: <1314246042.42801.YahooMailNeo@web39413.mail.mud.yahoo.com>



?Dear all,

? I am a new user of xcryden. I am trying to install xcryden by following the instruction on 
http://conquer-ur-computer.blogspot.com/2010/12/how-to-install-xcrysden-in-ubuntu-linux.html?.
After given the command make all,? the following error appears;

shankland.h:4: fatal error: meschach/matrix2.h: No such file or directory
compilation terminated.
make[2]: *** [fft3d.o] Error 1
make[2]: Leaving directory `/home/adetunji/XCrySDen-1.5.24-src-all/C'
make[1]: *** [compile] Error 2
make[1]: Leaving directory `/home/adetunji/XCrySDen-1.5.24-src-all/C'
make: *** [src-C] Error 2 

Please, what is the way out.


Adetunji Bamidele Ibrahim
Department of physics,University of Agriculture,
Abeokuta, Ogun State,Nigeria.
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