From dmwood at mines.edu Fri Jun 3 21:53:56 2011 From: dmwood at mines.edu (David M. Wood) Date: Fri, 3 Jun 2011 13:53:56 -0600 Subject: [xcrysden] fftw, meschach library problems, 1.5.23, Mac OS X Snow Leopard Message-ID: Howdy all! I am trying a severely revised Make.sys with system or macports dynamic libraries providing fftw version 3.2.2 and meschach version 1.2b using gfortran 4.4 I get: Undefined symbols for architecture x86_64: "_getline", referenced from: _ReadCoor in readstrf.o _ReadXSF in readstrf.o (maybe you meant: _getline_reserve) "_fftw_malloc", referenced from: _fft3d_interpolate in fft3d.o _shankland3d_interpolate in shank3d.o _general_grid_shankland_interpolator_tensor3f in shank3d.o "_fftw_plan_dft_r2c_3d", referenced from: _fft3d_interpolate in fft3d.o _shankland3d_interpolate in shank3d.o _general_grid_shankland_interpolator_tensor3f in shank3d.o "_fftw_plan_dft_c2r_3d", referenced from: _fft3d_interpolate in fft3d.o _shankland3d_interpolate in shank3d.o _general_grid_shankland_interpolator_tensor3f in shank3d.o "_fftw_execute", referenced from: _fft3d_interpolate in fft3d.o _shankland3d_interpolate in shank3d.o _general_grid_shankland_interpolator_tensor3f in shank3d.o "_fftw_destroy_plan", referenced from: _fft3d_interpolate in fft3d.o _shankland3d_interpolate in shank3d.o _general_grid_shankland_interpolator_tensor3f in shank3d.o "_fftw_free", referenced from: _fft3d_interpolate in fft3d.o _shankland3d_interpolate in shank3d.o _general_grid_shankland_interpolator_tensor3f in shank3d.o "_m_get", referenced from: _shank_Hinv in shank_Hinv.o _shank_HinvObj in shank_Hinv.o _shank1d_lambda in shank_Hinv.o _shank3d_lambda in shank_Hinv.o _shank2d_lambda in shank_Hinv.o _shank1d_lambdaObj in shank_Hinv.o "_m_inverse", referenced from: _shank_Hinv in shank_Hinv.o "_m_free", referenced from: _shank_Hinv in shank_Hinv.o _shank1d_lambda in shank_Hinv.o _shank3d_lambda in shank_Hinv.o _shank2d_lambda in shank_Hinv.o _shank1d_lambdaObj in shank_Hinv.o ... ld: symbol(s) not found for architecture x86_64 I have verified that all libraries I'm linking against are "Mach-O 64-bit dynamically linked shared library x86_64". The missing objects are: _getline _fftw_malloc _fftw_plan_dft_r2c_3d _fftw_plan_dft_c2r_3d _fftw_execute _fftw_destroy_plan _fftw_free _m_get _m_inverse _m_free This 'smells' like problems with meschach and fftw libraries. As quick tests, I did (in /opt/local/lib, where macports installs its libraries) grep fftw_destroy_plan * Binary file libfftw3.3.dylib matches Binary file libfftw3.a matches Binary file libfftw3.dylib matches grep m_inverse * Binary file libmeschach.1.2.dylib matches Binary file libmeschach.1.dylib matches Binary file libmeschach.a matches Binary file libmeschach.dylib matches so I don't really understand what's going on. I suspect problems with the loader, ld. Tone: Are there environment variables to pass load flags? Many thanks! DMW David M. Wood, Dept. of Physics, Colorado School of Mines, Golden, CO 80401 Phone: (303) 273-3853; Fax: (303) 273-3919 From tone.kokalj at ijs.si Wed Jun 8 08:53:54 2011 From: tone.kokalj at ijs.si (Tone Kokalj) Date: Wed, 08 Jun 2011 08:53:54 +0200 Subject: [xcrysden] fftw, meschach library problems, 1.5.23, Mac OS X Snow Leopard In-Reply-To: References: Message-ID: <1307516034.9356.19.camel@catalyst.ijs.si> On Fri, 2011-06-03 at 13:53 -0600, David M. Wood wrote: > Howdy all! > > I am trying a severely revised Make.sys with system or macports dynamic libraries providing fftw version 3.2.2 and meschach version 1.2b using gfortran 4.4 > > I get: > Undefined symbols for architecture x86_64: > "_getline", referenced from: For the undefined "_getline", add the -DXC_HAVE_NO_GETLINE to CFLAGS. For the fftw and meschach related undefined symbols, it is difficult to say. May be even the trailing underscore related problem. You may check the static libraries by nm command. i.e.: nm libfftw3.a | grep fftw_destroy_plan to see whether you get _fftw_destroy_plan or some other (underscore) variant of it. Regards, Tone -- Anton Kokalj J. Stefan Institute, Jamova 39, 1000 Ljubljana, Slovenia (tel: +386-1-477-3523 // fax:+386-1-477-3822) Please, if possible, avoid sending me Word or PowerPoint attachments. See: http://www.gnu.org/philosophy/no-word-attachments.html From dmwood at mines.edu Thu Jun 9 19:00:18 2011 From: dmwood at mines.edu (David M. Wood) Date: Thu, 9 Jun 2011 11:00:18 -0600 Subject: [xcrysden] 1.5.23 on Mac OS X Snow Leopard: almost there! Message-ID: Tone, thanks for your reply! My load problems were fixed by adding to Make.sys the lines MESCHACH_LIB = -L/opt/local/lib -lmeschach FFTW3_LIB = -L/opt/local/lib -lfftw3 (I also added loads of include variables that appear quite unnecessary.) The last remaining problems appear to be with getline.h, used in circumventing the absence of getline in glibc on OS X. (I'm embarassed to know no C, so cannot readily detect what's going on.) /opt/local/bin/gcc-mp-4.4 -O3 -m64 -DXC_HAVE_NO_GETLINE -DUSE_FONTS -I/opt/local/include/meschach -I/opt/local/include -I/opt/local/include/meschach -I/usr/X11R6/include -I/opt/local/include -c getline.c In file included from getline.c:25: getline.h:4: error: expected declaration specifiers or '...' before 'size_t' getline.h:4: error: expected declaration specifiers or '...' before 'FILE' getline.h:5: error: expected declaration specifiers or '...' before 'size_t' getline.h:5: error: expected declaration specifiers or '...' before 'FILE' getline.c:49: error: conflicting types for 'getline_reserve' getline.h:4: note: previous declaration of 'getline_reserve' was here getline.c: In function 'getline_reserve': getline.c:51: warning: passing argument 2 of 'getdelim_reserve' makes integer from pointer without a cast getline.h:5: note: expected 'int' but argument is of type 'size_t *' getline.c:51: error: too many arguments to function 'getdelim_reserve' getline.c: At top level: getline.c:61: error: conflicting types for 'getdelim_reserve' getline.h:5: note: previous declaration of 'getdelim_reserve' was here Thanks to any eagle-eyed reader who from this and the files getline.c and getline.h can spot the problem Best wishes, DMW David M. Wood, Dept. of Physics, Colorado School of Mines, Golden, CO 80401 Phone: (303) 273-3853; Fax: (303) 273-3919 From tone.kokalj at ijs.si Fri Jun 10 09:47:28 2011 From: tone.kokalj at ijs.si (Tone Kokalj) Date: Fri, 10 Jun 2011 09:47:28 +0200 Subject: [xcrysden] 1.5.23 on Mac OS X Snow Leopard: almost there! In-Reply-To: References: Message-ID: <1307692048.3302.1.camel@catalyst.ijs.si> On Thu, 2011-06-09 at 11:00 -0600, David M. Wood wrote: > Tone, thanks for your reply! > > My load problems were fixed by adding to Make.sys the lines > > MESCHACH_LIB = -L/opt/local/lib -lmeschach > FFTW3_LIB = -L/opt/local/lib -lfftw3 > > (I also added loads of include variables that appear quite unnecessary.) > > The last remaining problems appear to be with getline.h, used in circumventing the absence of getline in glibc on OS X. (I'm embarassed to know no C, so cannot readily detect what's going on.) > > /opt/local/bin/gcc-mp-4.4 -O3 -m64 -DXC_HAVE_NO_GETLINE -DUSE_FONTS -I/opt/local/include/meschach -I/opt/local/include -I/opt/local/include/meschach -I/usr/X11R6/include -I/opt/local/include -c getline.c > In file included from getline.c:25: > getline.h:4: error: expected declaration specifiers or '...' before 'size_t' I corrected the error (hopefully). Please replace the C/getline.c with the attached file and let me know if it works! regards, tone -- Anton Kokalj J. Stefan Institute, Jamova 39, 1000 Ljubljana, Slovenia (tel: +386-1-477-3523 // fax:+386-1-477-3822) Please, if possible, avoid sending me Word or PowerPoint attachments. See: http://www.gnu.org/philosophy/no-word-attachments.html -------------- next part -------------- A non-text attachment was scrubbed... Name: getline.c Type: text/x-csrc Size: 3169 bytes Desc: not available Url : http://www.democritos.it/pipermail/xcrysden/attachments/20110610/ec70590b/attachment.c From zhaohscas at yahoo.com.cn Sat Jun 18 11:29:24 2011 From: zhaohscas at yahoo.com.cn (Hongsheng Zhao) Date: Sat, 18 Jun 2011 17:29:24 +0800 Subject: [xcrysden] The issue of compiling XCrySDen-1.5.24-src-all on Debian squeeze. Message-ID: <4DFC6FF4.1040403@yahoo.com.cn> Dear Prof. Tone, I'm trying to compiling XCrySDen-1.5.24-src-all on Debian squeeze. I use the Make.linux-semishared as the Make.sys. When I type the *make all*, I meet the following errors: -------- In file included from /usr/include/meschach/matrix2.h:35:0, from shankland.h:4, from fft3d.c:6: /usr/include/meschach/matrix.h:49:3: error: unknown type name ?u_int? /usr/include/meschach/matrix.h:55:3: error: unknown type name ?u_int? /usr/include/meschach/matrix.h:56:3: error: unknown type name ?u_int? /usr/include/meschach/matrix.h:69:3: error: unknown type name ?u_int? /usr/include/meschach/matrix.h:74:3: error: unknown type name ?u_int? /usr/include/meschach/matrix.h:366:38: error: unknown type name ?u_int? /usr/include/meschach/matrix.h:366:47: error: unknown type name ?u_int? /usr/include/meschach/matrix.h:370:38: error: unknown type name ?u_int? /usr/include/meschach/matrix.h:448:38: error: unknown type name ?u_int? /usr/include/meschach/matrix.h:513:19: error: unknown type name ?u_int? /usr/include/meschach/matrix.h:513:25: error: unknown type name ?u_int? /usr/include/meschach/matrix.h:513:31: error: unknown type name ?u_int? /usr/include/meschach/matrix.h:513:37: error: unknown type name ?u_int? /usr/include/meschach/matrix.h:525:20: error: unknown type name ?u_int? /usr/include/meschach/matrix.h:525:37: error: unknown type name ?u_int? /usr/include/meschach/matrix.h:529:27: error: unknown type name ?u_int? /usr/include/meschach/matrix.h:557:23: error: unknown type name ?u_int? /usr/include/meschach/matrix.h:557:31: error: unknown type name ?u_int? In file included from shankland.h:4:0, from fft3d.c:6: /usr/include/meschach/matrix2.h:174:25: error: unknown type name ?u_int? /usr/include/meschach/matrix2.h:175:34: error: unknown type name ?u_int? /usr/include/meschach/matrix2.h:176:28: error: unknown type name ?u_int? /usr/include/meschach/matrix2.h:176:34: error: unknown type name ?u_int? /usr/include/meschach/matrix2.h:177:28: error: unknown type name ?u_int? /usr/include/meschach/matrix2.h:177:34: error: unknown type name ?u_int? /usr/include/meschach/matrix2.h:180:27: error: unknown type name ?u_int? /usr/include/meschach/matrix2.h:180:33: error: unknown type name ?u_int? /usr/include/meschach/matrix2.h:181:28: error: unknown type name ?u_int? /usr/include/meschach/matrix2.h:181:34: error: unknown type name ?u_int? /usr/include/meschach/matrix2.h:182:28: error: unknown type name ?u_int? /usr/include/meschach/matrix2.h:182:34: error: unknown type name ?u_int? make[2]: *** [fft3d.o] Error 1 make[2]: Leaving directory `/home/werner/software/XCrySDen_relative/XCrySDen-1.5.24-src-all/C' make[1]: *** [compile] Error 2 make[1]: Leaving directory `/home/werner/software/XCrySDen_relative/XCrySDen-1.5.24-src-all/C' make: *** [src-C] Error 2 --------- Any hints? Regards. -- Hongsheng Zhao School of Physics and Electrical Information Science, Ningxia University, Yinchuan 750021, China From tone.kokalj at ijs.si Thu Jun 23 11:18:58 2011 From: tone.kokalj at ijs.si (Tone Kokalj) Date: Thu, 23 Jun 2011 11:18:58 +0200 Subject: [xcrysden] The issue of compiling XCrySDen-1.5.24-src-all on Debian squeeze. In-Reply-To: <4DFC6FF4.1040403@yahoo.com.cn> References: <4DFC6FF4.1040403@yahoo.com.cn> Message-ID: <1308820738.3857.1.camel@catalyst.ijs.si> On Sat, 2011-06-18 at 17:29 +0800, Hongsheng Zhao wrote: > Dear Prof. Tone, > > I'm trying to compiling XCrySDen-1.5.24-src-all on Debian squeeze. > I use the Make.linux-semishared as the Make.sys. > > When I type the *make all*, I meet the following errors: > > > -------- > In file included from /usr/include/meschach/matrix2.h:35:0, > from shankland.h:4, > from fft3d.c:6: > /usr/include/meschach/matrix.h:49:3: error: unknown type name ?u_int? Delete the "-ansi" flag from the CFLAGS in Make.sys and it should work. Regards, Tone -- Anton Kokalj J. Stefan Institute, Jamova 39, 1000 Ljubljana, Slovenia (tel: +386-1-477-3523 // fax:+386-1-477-3822) Please, if possible, avoid sending me Word or PowerPoint attachments. See: http://www.gnu.org/philosophy/no-word-attachments.html From zhaohscas at yahoo.com.cn Thu Jun 23 11:55:17 2011 From: zhaohscas at yahoo.com.cn (Hongsheng Zhao) Date: Thu, 23 Jun 2011 17:55:17 +0800 Subject: [xcrysden] The issue of compiling XCrySDen-1.5.24-src-all on Debian squeeze. In-Reply-To: <1308820738.3857.1.camel@catalyst.ijs.si> References: <4DFC6FF4.1040403@yahoo.com.cn> <1308820738.3857.1.camel@catalyst.ijs.si> Message-ID: <4E030D85.9030908@yahoo.com.cn> On 06/23/2011 05:18 PM, Tone Kokalj wrote: > On Sat, 2011-06-18 at 17:29 +0800, Hongsheng Zhao wrote: >> Dear Prof. Tone, >> >> I'm trying to compiling XCrySDen-1.5.24-src-all on Debian squeeze. >> I use the Make.linux-semishared as the Make.sys. >> >> When I type the *make all*, I meet the following errors: >> >> >> -------- >> In file included from /usr/include/meschach/matrix2.h:35:0, >> from shankland.h:4, >> from fft3d.c:6: >> /usr/include/meschach/matrix.h:49:3: error: unknown type name ?u_int? > > Delete the "-ansi" flag from the CFLAGS in Make.sys and it should work. I've compiled it according to your above advice, but this time I meet the the following errors: ---------- fft3d.o: In function `fft3d_interpolate': fft3d.c:(.text+0x3eb): undefined reference to `fftw_malloc' fft3d.c:(.text+0x408): undefined reference to `fftw_malloc' fft3d.c:(.text+0x43a): undefined reference to `fftw_plan_dft_r2c_3d' fft3d.c:(.text+0x46c): undefined reference to `fftw_plan_dft_c2r_3d' fft3d.c:(.text+0x47a): undefined reference to `fftw_execute' fft3d.c:(.text+0x51e): undefined reference to `fftw_execute' fft3d.c:(.text+0x529): undefined reference to `fftw_destroy_plan' fft3d.c:(.text+0x534): undefined reference to `fftw_destroy_plan' fft3d.c:(.text+0x53f): undefined reference to `fftw_free' fft3d.c:(.text+0x54a): undefined reference to `fftw_free' shank3d.o: In function `shankland3d_interpolate': shank3d.c:(.text+0x440): undefined reference to `fftw_malloc' shank3d.c:(.text+0x472): undefined reference to `fftw_plan_dft_r2c_3d' shank3d.c:(.text+0x4a4): undefined reference to `fftw_plan_dft_c2r_3d' shank3d.c:(.text+0x615): undefined reference to `fftw_execute' shank3d.c:(.text+0x87b): undefined reference to `fftw_execute' shank3d.c:(.text+0x8bc): undefined reference to `fftw_destroy_plan' shank3d.c:(.text+0x8c7): undefined reference to `fftw_destroy_plan' shank3d.c:(.text+0x8d2): undefined reference to `fftw_free' shank_Hinv.o: In function `shank_HinvObj': shank_Hinv.c:(.text+0x2c): undefined reference to `m_get' shank_Hinv.o: In function `shank_Hinv': shank_Hinv.c:(.text+0xa5): undefined reference to `m_get' shank_Hinv.c:(.text+0x2a3): undefined reference to `m_inverse' shank_Hinv.c:(.text+0x2ae): undefined reference to `m_free' shank_Hinv.o: In function `shank1d_lambda': shank_Hinv.c:(.text+0x42c): undefined reference to `m_free' shank_Hinv.o: In function `shank2d_lambda': shank_Hinv.c:(.text+0x691): undefined reference to `m_free' shank_Hinv.c:(.text+0x69c): undefined reference to `m_free' shank_Hinv.o: In function `shank3d_lambda': shank_Hinv.c:(.text+0xa09): undefined reference to `m_free' shank_Hinv.o:shank_Hinv.c:(.text+0xa1c): more undefined references to `m_free' follow collect2: ld returned 1 exit status make[2]: *** [xcrys] Error 1 make[2]: Leaving directory `/home/werner/software/XCrySDen_relative/XCrySDen-1.5.24-src-all/C' make[1]: *** [compile] Error 2 make[1]: Leaving directory `/home/werner/software/XCrySDen_relative/XCrySDen-1.5.24-src-all/C' make: *** [src-C] Error 2 ---------- Attached please find the Make.sys file used in my case. Regards -- Hongsheng Zhao School of Physics and Electrical Information Science, Ningxia University, Yinchuan 750021, China -------------- next part -------------- An embedded and charset-unspecified text was scrubbed... Name: Make.sys Url: http://www.democritos.it/pipermail/xcrysden/attachments/20110623/213b2e4c/attachment.asc From tone.kokalj at ijs.si Thu Jun 23 11:58:49 2011 From: tone.kokalj at ijs.si (Tone Kokalj) Date: Thu, 23 Jun 2011 11:58:49 +0200 Subject: [xcrysden] The issue of compiling XCrySDen-1.5.24-src-all on Debian squeeze. In-Reply-To: <4E030D85.9030908@yahoo.com.cn> References: <4DFC6FF4.1040403@yahoo.com.cn> <1308820738.3857.1.camel@catalyst.ijs.si> <4E030D85.9030908@yahoo.com.cn> Message-ID: <1308823129.3857.4.camel@catalyst.ijs.si> On Thu, 2011-06-23 at 17:55 +0800, Hongsheng Zhao wrote: > On 06/23/2011 05:18 PM, Tone Kokalj wrote: > > On Sat, 2011-06-18 at 17:29 +0800, Hongsheng Zhao wrote: > >> Dear Prof. Tone, > >> > >> I'm trying to compiling XCrySDen-1.5.24-src-all on Debian squeeze. > >> I use the Make.linux-semishared as the Make.sys. > >> > >> When I type the *make all*, I meet the following errors: > >> > >> > >> -------- > >> In file included from /usr/include/meschach/matrix2.h:35:0, > >> from shankland.h:4, > >> from fft3d.c:6: > >> /usr/include/meschach/matrix.h:49:3: error: unknown type name ?u_int? > > > > Delete the "-ansi" flag from the CFLAGS in Make.sys and it should work. > > I've compiled it according to your above advice, but this time I meet > the the following errors: Add these to your Make.sys FFTW3_LIB = -lfftw3 MESCHACH_LIB = -lmeschach Regards, Tone -- Anton Kokalj J. Stefan Institute, Jamova 39, 1000 Ljubljana, Slovenia (tel: +386-1-477-3523 // fax:+386-1-477-3822) Please, if possible, avoid sending me Word or PowerPoint attachments. See: http://www.gnu.org/philosophy/no-word-attachments.html From zhaohscas at yahoo.com.cn Thu Jun 23 13:44:04 2011 From: zhaohscas at yahoo.com.cn (Hongsheng Zhao) Date: Thu, 23 Jun 2011 19:44:04 +0800 Subject: [xcrysden] The issue of compiling XCrySDen-1.5.24-src-all on Debian squeeze. In-Reply-To: <1308823129.3857.4.camel@catalyst.ijs.si> References: <4DFC6FF4.1040403@yahoo.com.cn> <1308820738.3857.1.camel@catalyst.ijs.si> <4E030D85.9030908@yahoo.com.cn> <1308823129.3857.4.camel@catalyst.ijs.si> Message-ID: <4E032704.2050809@yahoo.com.cn> On 06/23/2011 05:58 PM, Tone Kokalj wrote: > On Thu, 2011-06-23 at 17:55 +0800, Hongsheng Zhao wrote: >> On 06/23/2011 05:18 PM, Tone Kokalj wrote: >>> On Sat, 2011-06-18 at 17:29 +0800, Hongsheng Zhao wrote: >>>> Dear Prof. Tone, >>>> >>>> I'm trying to compiling XCrySDen-1.5.24-src-all on Debian squeeze. >>>> I use the Make.linux-semishared as the Make.sys. >>>> >>>> When I type the *make all*, I meet the following errors: >>>> >>>> >>>> -------- >>>> In file included from /usr/include/meschach/matrix2.h:35:0, >>>> from shankland.h:4, >>>> from fft3d.c:6: >>>> /usr/include/meschach/matrix.h:49:3: error: unknown type name ?u_int? >>> >>> Delete the "-ansi" flag from the CFLAGS in Make.sys and it should work. >> >> I've compiled it according to your above advice, but this time I meet >> the the following errors: > > Add these to your Make.sys > > FFTW3_LIB = -lfftw3 > MESCHACH_LIB = -lmeschach > > Regards, Tone Thanks a lot, it does the trick. Best. -- Hongsheng Zhao School of Physics and Electrical Information Science, Ningxia University, Yinchuan 750021, China From zhaohscas at yahoo.com.cn Thu Jun 23 14:10:45 2011 From: zhaohscas at yahoo.com.cn (Hongsheng Zhao) Date: Thu, 23 Jun 2011 20:10:45 +0800 Subject: [xcrysden] The issue of compiling XCrySDen-1.5.24-src-all on Debian squeeze. In-Reply-To: <4E032704.2050809@yahoo.com.cn> References: <4DFC6FF4.1040403@yahoo.com.cn> <1308820738.3857.1.camel@catalyst.ijs.si> <4E030D85.9030908@yahoo.com.cn> <1308823129.3857.4.camel@catalyst.ijs.si> <4E032704.2050809@yahoo.com.cn> Message-ID: <4E032D45.10802@yahoo.com.cn> On 06/23/2011 07:44 PM, Hongsheng Zhao wrote: > On 06/23/2011 05:58 PM, Tone Kokalj wrote: >> On Thu, 2011-06-23 at 17:55 +0800, Hongsheng Zhao wrote: >>> On 06/23/2011 05:18 PM, Tone Kokalj wrote: >>>> On Sat, 2011-06-18 at 17:29 +0800, Hongsheng Zhao wrote: >>>>> Dear Prof. Tone, >>>>> >>>>> I'm trying to compiling XCrySDen-1.5.24-src-all on Debian squeeze. >>>>> I use the Make.linux-semishared as the Make.sys. >>>>> >>>>> When I type the *make all*, I meet the following errors: >>>>> >>>>> >>>>> -------- >>>>> In file included from /usr/include/meschach/matrix2.h:35:0, >>>>> from shankland.h:4, >>>>> from fft3d.c:6: >>>>> /usr/include/meschach/matrix.h:49:3: error: unknown type name ?u_int? >>>> >>>> Delete the "-ansi" flag from the CFLAGS in Make.sys and it should work. Though I've compiled the XCrySDen-1.5.24-src-all successfully according to your valuable advice. But still I cann't understand these options very clearly, could you please give me some hints? Why must I delete the "-ansi" flag in order to compile it successfully? If we don't need this option at all, why not delete it from the original example Make.sys files supplied by you? >>> >>> I've compiled it according to your above advice, but this time I meet >>> the the following errors: >> >> Add these to your Make.sys >> >> FFTW3_LIB = -lfftw3 >> MESCHACH_LIB = -lmeschach Again, why must add these two lines? It is too difficult for me to figure out this solution. Regards. -- Hongsheng Zhao School of Physics and Electrical Information Science, Ningxia University, Yinchuan 750021, China From tone.kokalj at ijs.si Thu Jun 23 14:14:21 2011 From: tone.kokalj at ijs.si (Tone Kokalj) Date: Thu, 23 Jun 2011 14:14:21 +0200 Subject: [xcrysden] The issue of compiling XCrySDen-1.5.24-src-all on Debian squeeze. In-Reply-To: <4E032D45.10802@yahoo.com.cn> References: <4DFC6FF4.1040403@yahoo.com.cn> <1308820738.3857.1.camel@catalyst.ijs.si> <4E030D85.9030908@yahoo.com.cn> <1308823129.3857.4.camel@catalyst.ijs.si> <4E032704.2050809@yahoo.com.cn> <4E032D45.10802@yahoo.com.cn> Message-ID: <1308831261.3857.22.camel@catalyst.ijs.si> On Thu, 2011-06-23 at 20:10 +0800, Hongsheng Zhao wrote: > If we don't need > this option at all, why not delete it from the original example Make.sys > files supplied by you? > Again, why must add these two lines? It is too difficult for me to > figure out this solution. The reason is that there are some new things in version >= 1.5.23 and the system/Make.* files were not yet updated accordingly. They will be in next version thanks to you. Regards, Tone -- Anton Kokalj J. Stefan Institute, Jamova 39, 1000 Ljubljana, Slovenia (tel: +386-1-477-3523 // fax:+386-1-477-3822) Please, if possible, avoid sending me Word or PowerPoint attachments. See: http://www.gnu.org/philosophy/no-word-attachments.html From zhaohscas at yahoo.com.cn Fri Jun 24 05:23:11 2011 From: zhaohscas at yahoo.com.cn (Hongsheng Zhao) Date: Fri, 24 Jun 2011 11:23:11 +0800 Subject: [xcrysden] XCrySDen-1.5.24, right click will cause it to quit? Message-ID: <4E04031F.2070005@yahoo.com.cn> Dear Prof. Kokalj, I've compiled the XCrySDen-1.5.24-src-all according to your advice (for others: see the previously emails on this for the relative discussions). But when I run it, I find that the XCrySDen will quit when I right click in the window of it at any time. I think this is dangerous and not so convenient. In my mind, this is not the default behavior of the previous versions. Any hints on this issue/character? Regards. -- Hongsheng Zhao School of Physics and Electrical Information Science, Ningxia University, Yinchuan 750021, China From gyalcin at sakarya.edu.tr Fri Jun 24 11:14:25 2011 From: gyalcin at sakarya.edu.tr (Battal Gazi =?ISO-8859-9?Q?YAL=C7IN?=) Date: Fri, 24 Jun 2011 12:14:25 +0300 Subject: [xcrysden] installation_error_xcrysden Message-ID: Hello all, I try to install XCrySDen-1.5.24-bin-shared, but firstly I must install '' XCrySDen-1.5.21-bin-shared ''. How can I find this package. Please help me. Thanks Res. Asis. Battal Gazi YALCIN Sakarya University Physics Department Sakarya/ TURKIYE ___________________________________________________________________________________________ Bu e-posta, SA? CAWIS WebMail kullan?larak g?nderilmi?tir : http://www.mail.sakarya.edu.tr/ Sakarya ?niversitesi ile ilgili bilgi, haber ve duyurular i?in : http://www.sakarya.edu.tr/ ___________________________________________________________________________________________ From tone.kokalj at ijs.si Fri Jun 24 20:33:16 2011 From: tone.kokalj at ijs.si (Tone Kokalj) Date: Fri, 24 Jun 2011 20:33:16 +0200 Subject: [xcrysden] installation_error_xcrysden In-Reply-To: References: Message-ID: <1308940396.3217.2.camel@catalyst.ijs.si> On Fri, 2011-06-24 at 12:14 +0300, Battal Gazi YAL?IN wrote: > Hello all, I try to install XCrySDen-1.5.24-bin-shared, but firstly I must install '' XCrySDen-1.5.21-bin-shared ''. Why? My recommendation is to forget about 1.5.21, and simply install the 1.5.24. Regards, Tone -- Anton Kokalj J. Stefan Institute, Jamova 39, 1000 Ljubljana, Slovenia (tel: +386-1-477-3523 // fax:+386-1-477-3822) Please, if possible, avoid sending me Word or PowerPoint attachments. See: http://www.gnu.org/philosophy/no-word-attachments.html From tone.kokalj at ijs.si Fri Jun 24 20:35:48 2011 From: tone.kokalj at ijs.si (Tone Kokalj) Date: Fri, 24 Jun 2011 20:35:48 +0200 Subject: [xcrysden] XCrySDen-1.5.24, right click will cause it to quit? In-Reply-To: <4E04031F.2070005@yahoo.com.cn> References: <4E04031F.2070005@yahoo.com.cn> Message-ID: <1308940548.3217.4.camel@catalyst.ijs.si> On Fri, 2011-06-24 at 11:23 +0800, Hongsheng Zhao wrote: > Dear Prof. Kokalj, > > I've compiled the XCrySDen-1.5.24-src-all according to your advice (for > others: see the previously emails on this for the relative discussions). > But when I run it, I find that the XCrySDen will quit when I right > click in the window of it at any time. I think this is dangerous and > not so convenient. In my mind, this is not the default behavior of the > previous versions. Any hints on this issue/character? Difficult to say what's the reason. Did you already tried the web available compiled 32bit version? Regards, Tone -- Anton Kokalj J. Stefan Institute, Jamova 39, 1000 Ljubljana, Slovenia (tel: +386-1-477-3523 // fax:+386-1-477-3822) Please, if possible, avoid sending me Word or PowerPoint attachments. See: http://www.gnu.org/philosophy/no-word-attachments.html From zhaohscas at yahoo.com.cn Sat Jun 25 04:00:26 2011 From: zhaohscas at yahoo.com.cn (Hongsheng Zhao) Date: Sat, 25 Jun 2011 10:00:26 +0800 Subject: [xcrysden] XCrySDen-1.5.24, right click will cause it to quit? In-Reply-To: <1308940548.3217.4.camel@catalyst.ijs.si> References: <4E04031F.2070005@yahoo.com.cn> <1308940548.3217.4.camel@catalyst.ijs.si> Message-ID: <4E05413A.50005@yahoo.com.cn> On 06/25/2011 02:35 AM, Tone Kokalj wrote: > On Fri, 2011-06-24 at 11:23 +0800, Hongsheng Zhao wrote: >> Dear Prof. Kokalj, >> >> I've compiled the XCrySDen-1.5.24-src-all according to your advice (for >> others: see the previously emails on this for the relative discussions). >> But when I run it, I find that the XCrySDen will quit when I right >> click in the window of it at any time. I think this is dangerous and >> not so convenient. In my mind, this is not the default behavior of the >> previous versions. Any hints on this issue/character? > > Difficult to say what's the reason. > Did you already tried the web available compiled 32bit version? I've tried this one, it seems this runs smoothly without that issue. Regards. -- Hongsheng Zhao School of Physics and Electrical Information Science, Ningxia University, Yinchuan 750021, China