From eric.altman at yale.edu Tue Aug 12 17:55:42 2014 From: eric.altman at yale.edu (Altman, Eric) Date: Tue, 12 Aug 2014 15:55:42 +0000 Subject: [xcrysden] Upgrade to Cygwin64 Message-ID: <15AD3274F80E6543890B8A7EABB7EF2317C1F5@x10-mbx8.yu.yale.edu> I have been using xcrysden with Cygwin for the last year or so. I have been working on upgrading my computer to the 64 bit version of Cygwin. I have installed all of the required files and components but xcrysden is exiting after the following lines: XCRYSDEN_TOPDIR=/XCrySDen XCRYSDEN_SCRATCH=/tmp Does xcrysden work with Cygwin64 or am I wasting my time? If it ought to work, then what do I need to do differently for Cygwin64? Thanks. -------------- next part -------------- An HTML attachment was scrubbed... URL: http://www.democritos.it/pipermail/xcrysden/attachments/20140812/407609ca/attachment.htm From gsabo at crimson.ua.edu Tue Aug 12 20:41:33 2014 From: gsabo at crimson.ua.edu (Gavin Abo) Date: Tue, 12 Aug 2014 12:41:33 -0600 Subject: [xcrysden] Upgrade to Cygwin64 In-Reply-To: <15AD3274F80E6543890B8A7EABB7EF2317C1F5@x10-mbx8.yu.yale.edu> References: <15AD3274F80E6543890B8A7EABB7EF2317C1F5@x10-mbx8.yu.yale.edu> Message-ID: <53EA5FDD.70403@crimson.ua.edu> You might want to read the post at: http://www.democritos.it/pipermail/xcrysden/2014-July/001635.html On 8/12/2014 9:55 AM, Altman, Eric wrote: > > I have been using xcrysden with Cygwin for the last year or so. I > have been working on upgrading my computer to the 64 bit version of > Cygwin. I have installed all of the required files and components but > xcrysden is exiting after the following lines: > XCRYSDEN_TOPDIR=/XCrySDen XCRYSDEN_SCRATCH=/tmp > > Does xcrysden work with Cygwin64 or am I wasting my time? If it ought > to work, then what do I need to do differently for Cygwin64? > > Thanks. > -------------- next part -------------- An HTML attachment was scrubbed... URL: http://www.democritos.it/pipermail/xcrysden/attachments/20140812/748dbc06/attachment.htm From eric.altman at yale.edu Thu Aug 14 02:31:03 2014 From: eric.altman at yale.edu (Altman, Eric) Date: Thu, 14 Aug 2014 00:31:03 +0000 Subject: [xcrysden] XCrySDen Digest, Vol 79, Issue 1 In-Reply-To: References: Message-ID: <15AD3274F80E6543890B8A7EABB7EF2317E468@x10-mbx8.yu.yale.edu> OK, thank you, so it almost works. I still have an issue though with the "cygwin.patch" part. The phrasing in the description was vague, is this a file that was supposed to be attached but got "scrubbed"? Otherwise, where can this file be obtained? The errors I get at this point are: $ Running on platform : cygwin Operating system : CYGWIN_NT-6.2 Error in startup script: invalid command name "exec" while executing "exec $env(XCRYSDEN_TOPDIR)/scripts/pwd.sh" (procedure "pwd" line 7) invoked from within "pwd" invoked from within "set system(PWD) [pwd]" (file "/xcrysden-1.5.60/Tcl/xcInitLib.tcl" line 54) invoked from within "source $system(TOPDIR)/Tcl/xcInitLib.tcl " ("eval" body line 15) invoked from within "eval [info body xcInit]" (file "/xcrysden-1.5.60/Tcl/xcInit.tcl" line 575) Thanks. -----Original Message----- From: xcrysden-bounces at democritos.it [mailto:xcrysden-bounces at democritos.it] On Behalf Of xcrysden-request at democritos.it Sent: Wednesday, August 13, 2014 1:35 AM To: xcrysden at democritos.it Subject: XCrySDen Digest, Vol 79, Issue 1 Send XCrySDen mailing list submissions to xcrysden at democritos.it To subscribe or unsubscribe via the World Wide Web, visit http://www.democritos.it/mailman/listinfo/xcrysden or, via email, send a message with subject or body 'help' to xcrysden-request at democritos.it You can reach the person managing the list at xcrysden-owner at democritos.it When replying, please edit your Subject line so it is more specific than "Re: Contents of XCrySDen digest..." Today's Topics: 1. Upgrade to Cygwin64 (Altman, Eric) 2. Re: Upgrade to Cygwin64 (Gavin Abo) ---------------------------------------------------------------------- Message: 1 Date: Tue, 12 Aug 2014 15:55:42 +0000 From: "Altman, Eric" Subject: [xcrysden] Upgrade to Cygwin64 To: "xcrysden at democritos.it" Message-ID: <15AD3274F80E6543890B8A7EABB7EF2317C1F5 at x10-mbx8.yu.yale.edu> Content-Type: text/plain; charset="us-ascii" I have been using xcrysden with Cygwin for the last year or so. I have been working on upgrading my computer to the 64 bit version of Cygwin. I have installed all of the required files and components but xcrysden is exiting after the following lines: XCRYSDEN_TOPDIR=/XCrySDen XCRYSDEN_SCRATCH=/tmp Does xcrysden work with Cygwin64 or am I wasting my time? If it ought to work, then what do I need to do differently for Cygwin64? Thanks. -------------- next part -------------- An HTML attachment was scrubbed... URL: http://www.democritos.it/pipermail/xcrysden/attachments/20140812/407609ca/attachment.html ------------------------------ Message: 2 Date: Tue, 12 Aug 2014 12:41:33 -0600 From: Gavin Abo Subject: Re: [xcrysden] Upgrade to Cygwin64 To: XCrySDen mailing list Message-ID: <53EA5FDD.70403 at crimson.ua.edu> Content-Type: text/plain; charset="iso-8859-1" You might want to read the post at: http://www.democritos.it/pipermail/xcrysden/2014-July/001635.html On 8/12/2014 9:55 AM, Altman, Eric wrote: > > I have been using xcrysden with Cygwin for the last year or so. I > have been working on upgrading my computer to the 64 bit version of > Cygwin. I have installed all of the required files and components but > xcrysden is exiting after the following lines: > XCRYSDEN_TOPDIR=/XCrySDen XCRYSDEN_SCRATCH=/tmp > > Does xcrysden work with Cygwin64 or am I wasting my time? If it ought > to work, then what do I need to do differently for Cygwin64? > > Thanks. > -------------- next part -------------- An HTML attachment was scrubbed... URL: http://www.democritos.it/pipermail/xcrysden/attachments/20140812/748dbc06/attachment-0001.htm ------------------------------ _______________________________________________ XCrySDen mailing list XCrySDen at democritos.it http://www.democritos.it/mailman/listinfo/xcrysden End of XCrySDen Digest, Vol 79, Issue 1 *************************************** From gsabo at crimson.ua.edu Thu Aug 14 02:59:03 2014 From: gsabo at crimson.ua.edu (Gavin Abo) Date: Wed, 13 Aug 2014 18:59:03 -0600 Subject: [xcrysden] XCrySDen Digest, Vol 79, Issue 1 In-Reply-To: <15AD3274F80E6543890B8A7EABB7EF2317E468@x10-mbx8.yu.yale.edu> References: <15AD3274F80E6543890B8A7EABB7EF2317E468@x10-mbx8.yu.yale.edu> Message-ID: <53EC09D7.4050404@crimson.ua.edu> Yes, it was an attached file. However, the contents are still in the post as: -------------- next part -------------- 38c38 < rename exec _tcl_exec --- > #rename exec _tcl_exec -------------- next part -------------- You should be able to copy and paste the lines between "next part" into a text editor and save it with the name cygwin.patch to recreate the file. On 8/13/2014 6:31 PM, Altman, Eric wrote: > OK, thank you, so it almost works. I still have an issue though with the "cygwin.patch" part. The phrasing in the description was vague, is this a file that was supposed to be attached but got "scrubbed"? Otherwise, where can this file be obtained? > > The errors I get at this point are: > > $ Running on platform : cygwin > Operating system : CYGWIN_NT-6.2 > Error in startup script: invalid command name "exec" > while executing > "exec $env(XCRYSDEN_TOPDIR)/scripts/pwd.sh" > (procedure "pwd" line 7) > invoked from within > "pwd" > invoked from within > "set system(PWD) [pwd]" > (file "/xcrysden-1.5.60/Tcl/xcInitLib.tcl" line 54) > invoked from within > "source $system(TOPDIR)/Tcl/xcInitLib.tcl" > ("eval" body line 15) > invoked from within > "eval [info body xcInit]" > (file "/xcrysden-1.5.60/Tcl/xcInit.tcl" line 575) > > Thanks. > > -----Original Message----- > From: xcrysden-bounces at democritos.it [mailto:xcrysden-bounces at democritos.it] On Behalf Of xcrysden-request at democritos.it > Sent: Wednesday, August 13, 2014 1:35 AM > To: xcrysden at democritos.it > Subject: XCrySDen Digest, Vol 79, Issue 1 > > Send XCrySDen mailing list submissions to > xcrysden at democritos.it > > To subscribe or unsubscribe via the World Wide Web, visit > http://www.democritos.it/mailman/listinfo/xcrysden > or, via email, send a message with subject or body 'help' to > xcrysden-request at democritos.it > > You can reach the person managing the list at > xcrysden-owner at democritos.it > > When replying, please edit your Subject line so it is more specific than "Re: Contents of XCrySDen digest..." > > > Today's Topics: > > 1. Upgrade to Cygwin64 (Altman, Eric) > 2. Re: Upgrade to Cygwin64 (Gavin Abo) > > > ---------------------------------------------------------------------- > > Message: 1 > Date: Tue, 12 Aug 2014 15:55:42 +0000 > From: "Altman, Eric" > Subject: [xcrysden] Upgrade to Cygwin64 > To: "xcrysden at democritos.it" > Message-ID: > <15AD3274F80E6543890B8A7EABB7EF2317C1F5 at x10-mbx8.yu.yale.edu> > Content-Type: text/plain; charset="us-ascii" > > I have been using xcrysden with Cygwin for the last year or so. I have been working on upgrading my computer to the 64 bit version of Cygwin. I have installed all of the required files and components but xcrysden is exiting after the following lines: XCRYSDEN_TOPDIR=/XCrySDen XCRYSDEN_SCRATCH=/tmp > > Does xcrysden work with Cygwin64 or am I wasting my time? If it ought to work, then what do I need to do differently for Cygwin64? > > Thanks. > -------------- next part -------------- > An HTML attachment was scrubbed... > URL: http://www.democritos.it/pipermail/xcrysden/attachments/20140812/407609ca/attachment.html > > ------------------------------ > > Message: 2 > Date: Tue, 12 Aug 2014 12:41:33 -0600 > From: Gavin Abo > Subject: Re: [xcrysden] Upgrade to Cygwin64 > To: XCrySDen mailing list > Message-ID: <53EA5FDD.70403 at crimson.ua.edu> > Content-Type: text/plain; charset="iso-8859-1" > > You might want to read the post at: > > http://www.democritos.it/pipermail/xcrysden/2014-July/001635.html > > On 8/12/2014 9:55 AM, Altman, Eric wrote: >> I have been using xcrysden with Cygwin for the last year or so. I >> have been working on upgrading my computer to the 64 bit version of >> Cygwin. I have installed all of the required files and components but >> xcrysden is exiting after the following lines: >> XCRYSDEN_TOPDIR=/XCrySDen XCRYSDEN_SCRATCH=/tmp >> >> Does xcrysden work with Cygwin64 or am I wasting my time? If it ought >> to work, then what do I need to do differently for Cygwin64? >> >> Thanks. >> > -------------- next part -------------- > An HTML attachment was scrubbed... > URL: http://www.democritos.it/pipermail/xcrysden/attachments/20140812/748dbc06/attachment-0001.htm > > ------------------------------ > > _______________________________________________ > XCrySDen mailing list > XCrySDen at democritos.it > http://www.democritos.it/mailman/listinfo/xcrysden > > > End of XCrySDen Digest, Vol 79, Issue 1 > *************************************** > _______________________________________________ > XCrySDen mailing list > XCrySDen at democritos.it > http://www.democritos.it/mailman/listinfo/xcrysden > From Daniele.Passerone at empa.ch Tue Aug 26 23:20:16 2014 From: Daniele.Passerone at empa.ch (Passerone, Daniele) Date: Tue, 26 Aug 2014 21:20:16 +0000 Subject: [xcrysden] Xcrysden / Macosx 10.9 Message-ID: <2EDBE5E743C8C1489A8F7B58124127105F276CDF@ee-mbx2.ee.emp-eaw.ch> Dear developers, As far as I know, the problem by executing a successfully compiled xcrysden on Mavericks is still not solved. The solution of installing mesa 7.0.3 is not so easy, and the port proposed here: https://trac.macports.org/ticket/41320 has not been approved by macports, being 7.0 of mesa too obsolete. Has somebody of you a simple solution to this problem? The error I get is X Error of failed request: BadWindow (invalid Window parameter) Major opcode of failed request: 3 (X_GetWindowAttributes) Resource id in failed request: 0xffffffff Serial number of failed request: 566 Current serial number in output stream: 567 Thank you very much Daniele ************************************************************* Dr. Daniele Passerone Abteilung nanotech at surfaces Theory and atomistic simulation of materials Empa - Materials Science & Technology Ueberlandstrasse 129 CH-8600 D?bendorf Tel +41 44 823 4877 Fax +41 44 823 4031 daniele.passerone at empa.ch www.empa.ch E-mail from non-academic servers: daniele at passerone.net ************************************************************ -------------- next part -------------- An HTML attachment was scrubbed... URL: http://www.democritos.it/pipermail/xcrysden/attachments/20140826/045913d0/attachment.htm From martin at ruby.chemie.uni-freiburg.de Wed Aug 27 01:38:44 2014 From: martin at ruby.chemie.uni-freiburg.de (Martin Kroeker) Date: Wed, 27 Aug 2014 01:38:44 +0200 (CEST) Subject: [xcrysden] Xcrysden / Macosx 10.9 In-Reply-To: <2EDBE5E743C8C1489A8F7B58124127105F276CDF@ee-mbx2.ee.emp-eaw.ch> Message-ID: <20140826233844.D873A801B3@ruby.chemie.uni-freiburg.de> Can you please try setting/exporting "LIBGL_ALWAYS_INDIRECT=1 before starting xcrysden ? Could be that this is sufficient to work around the issue. Regards Martin > > Dear developers, > As far as I know, the problem by executing a successfully compiled xcrysden on Mavericks is still not solved. > The solution of installing mesa 7.0.3 is not so easy, and the port proposed here: > > https://trac.macports.org/ticket/41320 > > has not been approved by macports, being 7.0 of mesa too obsolete. > > Has somebody of you a simple solution to this problem? > The error I get is > > > X Error of failed request: BadWindow (invalid Window parameter) > Major opcode of failed request: 3 (X_GetWindowAttributes) > Resource id in failed request: 0xffffffff > Serial number of failed request: 566 > Current serial number in output stream: 567 > > Thank you very much > Daniele > > ************************************************************* > > Dr. Daniele Passerone > Abteilung nanotech at surfaces > Theory and atomistic simulation of materials > Empa - Materials Science & Technology > Ueberlandstrasse 129 > CH-8600 D?bendorf > > Tel +41 44 823 4877 > Fax +41 44 823 4031 > > daniele.passerone at empa.ch > www.empa.ch > E-mail from non-academic servers: > daniele at passerone.net > > ************************************************************ > > _______________________________________________ > XCrySDen mailing list > XCrySDen at democritos.it > http://www.democritos.it/mailman/listinfo/xcrysden -- Dr. Martin Kroeker martin at ruby.chemie.uni-freiburg.de c/o Prof.Dr. Caroline Roehr Institut fuer Anorganische und Analytische Chemie der Universitaet Freiburg From Daniele.Passerone at empa.ch Wed Aug 27 07:06:32 2014 From: Daniele.Passerone at empa.ch (Passerone, Daniele) Date: Wed, 27 Aug 2014 05:06:32 +0000 Subject: [xcrysden] Xcrysden / Macosx 10.9 In-Reply-To: <20140826233844.D873A801B3@ruby.chemie.uni-freiburg.de> References: <2EDBE5E743C8C1489A8F7B58124127105F276CDF@ee-mbx2.ee.emp-eaw.ch> <20140826233844.D873A801B3@ruby.chemie.uni-freiburg.de> Message-ID: Unfortunately, it did not work. Thank you for answering, however! On 27/08/14 01:38, "Martin Kroeker" wrote: >Can you please try setting/exporting "LIBGL_ALWAYS_INDIRECT=1 before >starting xcrysden ? Could be that this is sufficient to work around the >issue. > >Regards >Martin > >> >> Dear developers, >> As far as I know, the problem by executing a successfully compiled >>xcrysden on Mavericks is still not solved. >> The solution of installing mesa 7.0.3 is not so easy, and the port >>proposed here: >> >> https://trac.macports.org/ticket/41320 >> >> has not been approved by macports, being 7.0 of mesa too obsolete. >> >> Has somebody of you a simple solution to this problem? >> The error I get is >> >> >> X Error of failed request: BadWindow (invalid Window parameter) >> Major opcode of failed request: 3 (X_GetWindowAttributes) >> Resource id in failed request: 0xffffffff >> Serial number of failed request: 566 >> Current serial number in output stream: 567 >> >> Thank you very much >> Daniele >> >> ************************************************************* >> >> Dr. Daniele Passerone >> Abteilung nanotech at surfaces >> Theory and atomistic simulation of materials >> Empa - Materials Science & Technology >> Ueberlandstrasse 129 >> CH-8600 D?bendorf >> >> Tel +41 44 823 4877 >> Fax +41 44 823 4031 >> >> daniele.passerone at empa.ch >> www.empa.ch >> E-mail from non-academic servers: >> daniele at passerone.net >> >> ************************************************************ >> > >> _______________________________________________ >> XCrySDen mailing list >> XCrySDen at democritos.it >> http://www.democritos.it/mailman/listinfo/xcrysden > >-- >Dr. Martin Kroeker martin at ruby.chemie.uni-freiburg.de >c/o Prof.Dr. Caroline Roehr >Institut fuer Anorganische und Analytische Chemie der Universitaet >Freiburg > >_______________________________________________ >XCrySDen mailing list >XCrySDen at democritos.it >http://www.democritos.it/mailman/listinfo/xcrysden