No subject
Mon Feb 2 10:44:46 CET 2015
http://www.xcrysden.org/News.html
If you haven't installed fink in your mac yet=2C this is how you do it:
http://www.finkproject.org/doc/bundled/install-first.php
Once you have fink in your mac you just execute the following command:
fink install xcrysden
Hope that helps.=20
Ryky
On Sat=2C May 23=2C 2015 at 3:32 AM=2C Mirko Pieropan <mirkopan91 at hotmail.i=
t> wrote:
=0A=
=0A=
=0A=
Hello everybody=2CI'm having troubles installing XCrysDen on my Mac Os X.I'=
ve successfully untarred the download file and then I've attempted to run t=
he xcrysden file.Maybe I'm doing something wrong but it seems there is no b=
in/xcrys folder!I get the following in my terminal:MBP-di-Mirko:xcrysden-1.=
5.60 mirko$ ./xcrysden =0A=
=0A=
+-----------------------------------------------------------------+=0A=
|*****************************************************************|=0A=
|* *|=0A=
|* XCrySDen -- (X-Window) CRYstalline Structures and DENsities *|=0A=
|* =3D =3D=3D=3D =3D =3D=3D=3D =
*|=0A=
|*---------------------------------------------------------------*|=0A=
|* *|=0A=
|* Anton Kokalj (tone.kokalj at ijs.si) *|=0A=
|* Jozef Stefan Institute=2C Ljubljana=2C Slovenia *|=0A=
|* *|=0A=
|* Copyright (c) 1996--2014 by Anton Kokalj *|=0A=
|* *|=0A=
|*****************************************************************|=0A=
+-----------------------------------------------------------------+=0A=
=0A=
Version: 1.5.60=0A=
=0A=
Please report bugs to: tone.kokalj at ijs.si=0A=
=0A=
=0A=
TERMS OF USE:=0A=
-------------=0A=
XCRYSDEN is released under the GNU General Public License.=0A=
=0A=
Whenever graphics generated by XCRYSDEN are used in scientific=0A=
publications=2C it shall be greatly appreciated to include an explicit=0A=
reference. The preferred form is the following:=0A=
=0A=
[ref] A. Kokalj=2C J. Mol. Graph. Model.=2C Vol. 17=2C pp. 176-179=2C 199=
9.=0A=
Code available from http://www.xcrysden.org/.=0A=
=0A=
XCRYSDEN_TOPDIR=3D/Users/mirko/Desktop/xcrysden-1.5.60=0A=
XCRYSDEN_SCRATCH=3D/var/folders/g8/2m80kqls4m750q_phtmbmwxc0000gn/T/=0A=
=0A=
./xcrysden: line 257: /Users/mirko/Desktop/xcrysden-1.5.60/bin/xcrys: No su=
ch file or directory
Can anybody help?Thank you very much in advance.
Mirko =0A=
_______________________________________________
=0A=
XCrySDen mailing list
=0A=
XCrySDen at democritos.it
=0A=
http://www.democritos.it/mailman/listinfo/xcrysden
=0A=
=0A=
_______________________________________________=0A=
XCrySDen mailing list=0A=
XCrySDen at democritos.it=0A=
http://www.democritos.it/mailman/listinfo/xcrysden =
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<body class=3D'hmmessage'><div dir=3D'ltr'>Thank you=2C<div>now=2C after ha=
ving installed fink=2C I get stuck. I get the following:</div><div><br></di=
v><div><p style=3D"font-size: 11px=3B font-family: Menlo=3B">MBP-di-Mirko:/=
mirko$ fink install xcrysden</p>=0A=
<p style=3D"font-size: 11px=3B font-family: Menlo=3B">Information about 112=
42 packages read in 0 seconds.</p>=0A=
<p style=3D"font-size: 11px=3B font-family: Menlo=3B min-height: 13px=3B"><=
br></p>=0A=
<p style=3D"font-size: 11px=3B font-family: Menlo=3B">fink needs help picki=
ng an alternative to satisfy a virtual dependency. The</p>=0A=
<p style=3D"font-size: 11px=3B font-family: Menlo=3B">candidates:</p>=0A=
<p style=3D"font-size: 11px=3B font-family: Menlo=3B min-height: 13px=3B"><=
br></p>=0A=
<p style=3D"font-size: 11px=3B font-family: Menlo=3B">(1)<span class=3D"App=
le-tab-span" style=3D"white-space:pre"> </span>automake1.14: GNU Standards-=
compliant Makefile generator</p>=0A=
<p style=3D"font-size: 11px=3B font-family: Menlo=3B">(2)<span class=3D"App=
le-tab-span" style=3D"white-space:pre"> </span>automake1.13: GNU Standards-=
compliant Makefile generator</p>=0A=
<p style=3D"font-size: 11px=3B font-family: Menlo=3B">(3)<span class=3D"App=
le-tab-span" style=3D"white-space:pre"> </span>automake1.12: GNU Standards-=
compliant Makefile generator</p>=0A=
<p style=3D"font-size: 11px=3B font-family: Menlo=3B min-height: 13px=3B"><=
br></p>=0A=
<p style=3D"font-size: 11px=3B font-family: Menlo=3B">Pick one: [1] 1</p>=
=0A=
<p style=3D"font-size: 11px=3B font-family: Menlo=3B">The following package=
will be installed or updated:</p>=0A=
<p style=3D"font-size: 11px=3B font-family: Menlo=3B"> =3Bxcrysden</p>=
=0A=
<p style=3D"font-size: 11px=3B font-family: Menlo=3B">The following 39 addi=
tional packages will be installed:</p>=0A=
<p style=3D"font-size: 11px=3B font-family: Menlo=3B"> =3Bautoconf2.6 a=
utomake1.14 automake1.14-core cloog-org2 cloog-org2-shlibs</p>=0A=
<p style=3D"font-size: 11px=3B font-family: Menlo=3B"> =3Bcoreutils exp=
at1 fftw3 fink-buildenv-modules fink-package-precedence</p>=0A=
<p style=3D"font-size: 11px=3B font-family: Menlo=3B"> =3Bfontconfig2-d=
ev freetype219 gcc49-compiler gcc5-compiler gettext-tools gmp5</p>=0A=
<p style=3D"font-size: 11px=3B font-family: Menlo=3B"> =3Bhelp2man-perl=
5182 isl isl-shlibs isl2 isl2-shlibs libgmpxx5-shlibs libmpc3</p>=0A=
<p style=3D"font-size: 11px=3B font-family: Menlo=3B"> =3Blibmpc3-shlib=
s libmpfr4 libmpfr4-shlibs libpng16 libsigsegv2</p>=0A=
<p style=3D"font-size: 11px=3B font-family: Menlo=3B"> =3Blibsigsegv2-s=
hlibs libtool2 locale-gettext-pm5182 m4 mesa mesa-shlibs</p>=0A=
<p style=3D"font-size: 11px=3B font-family: Menlo=3B"> =3Btcltk-dev tex=
i2html texinfo xft2-dev xz</p>=0A=
<p style=3D"font-size: 11px=3B font-family: Menlo=3B">Default answer will b=
e chosen in 60 seconds...</p>=0A=
<p style=3D"font-size: 11px=3B font-family: Menlo=3B">Do you want to contin=
ue? [Y/n] y</p>=0A=
<p style=3D"font-size: 11px=3B font-family: Menlo=3B">curl --connect-timeou=
t 30 -f -L -A 'fink/0.38.5' -O ftp://ftp.debian.org/debian/pool/main/f/free=
type/freetype_2.5.2-2.diff.gz</p>=0A=
<p style=3D"font-size: 11px=3B font-family: Menlo=3B"> =3B % Total =
=3B  =3B % Received % Xferd =3B Average Speed  =3B Time =3B=
 =3B Time  =3B  =3B Time =3B Current</p>=0A=
<p style=3D"font-size: 11px=3B font-family: Menlo=3B"> =3B =3B &nbs=
p=3B  =3B  =3B  =3B  =3B  =3B  =3B  =3B  =
=3B  =3B  =3B  =3B  =3B  =3B  =3B Dload =3B Upl=
oad  =3B Total  =3B Spent =3B  =3B Left =3B Speed</p>=
=0A=
<p style=3D"font-size: 11px=3B font-family: Menlo=3B"> =3B 0  =3B &=
nbsp=3B 0 =3B  =3B 0  =3B  =3B 0 =3B  =3B 0  =
=3B  =3B 0 =3B  =3B  =3B 0 =3B  =3B  =3B 0 --:-=
-:-- =3B 0:00:01 --:--:--  =3B  =3B 0</p>=0A=
<p style=3D"font-size: 11px=3B font-family: Menlo=3B">curl: (78) RETR respo=
nse: 550</p>=0A=
<p style=3D"font-size: 11px=3B font-family: Menlo=3B">### execution of curl=
failed=2C exit code 78</p>=0A=
<p style=3D"font-size: 11px=3B font-family: Menlo=3B">Downloading the file =
"freetype_2.5.2-2.diff.gz" failed.</p>=0A=
<p style=3D"font-size: 11px=3B font-family: Menlo=3B min-height: 13px=3B"><=
br></p>=0A=
<p style=3D"font-size: 11px=3B font-family: Menlo=3B">(1)<span class=3D"App=
le-tab-span" style=3D"white-space:pre"> </span>Give up</p>=0A=
<p style=3D"font-size: 11px=3B font-family: Menlo=3B">(2)<span class=3D"App=
le-tab-span" style=3D"white-space:pre"> </span>Retry the same mirror</p>=0A=
<p style=3D"font-size: 11px=3B font-family: Menlo=3B">(3)<span class=3D"App=
le-tab-span" style=3D"white-space:pre"> </span>Retry another mirror from yo=
ur country</p>=0A=
<p style=3D"font-size: 11px=3B font-family: Menlo=3B">(4)<span class=3D"App=
le-tab-span" style=3D"white-space:pre"> </span>Retry another mirror from yo=
ur continent</p>=0A=
<p style=3D"font-size: 11px=3B font-family: Menlo=3B">(5)<span class=3D"App=
le-tab-span" style=3D"white-space:pre"> </span>Retry another mirror</p>=0A=
<p style=3D"font-size: 11px=3B font-family: Menlo=3B min-height: 13px=3B"><=
br></p>=0A=
<p style=3D"font-size: 11px=3B font-family: Menlo=3B">Default answer will b=
e chosen in 120 seconds...</p>=0A=
<p style=3D"font-size: 11px=3B font-family: Menlo=3B">How do you want to pr=
oceed? [3] =3B</p><p style=3D"font-size: 11px=3B font-family: Menlo=3B"=
><br></p><p style=3D"font-size: 11px=3B font-family: Menlo=3B">What should =
I do? I tried all the options many times.</p><p style=3D"font-size: 11px=3B=
font-family: Menlo=3B">Thanks again in advance.</p><p style=3D"font-size: =
11px=3B font-family: Menlo=3B"><br></p><p style=3D"font-size: 11px=3B font-=
family: Menlo=3B">Mirko</p><br><div><hr id=3D"stopSpelling">From: nelson.ry=
ky at gmail.com<br>Date: Sat=2C 23 May 2015 13:23:22 -0500<br>To: xcrysden at dem=
ocritos.it<br>Subject: Re: [xcrysden] troubles installing xcrysden<br><br><=
div dir=3D"ltr"><div class=3D"ecxgmail_default" style=3D"font-family:'times=
new roman'=2Cserif=3Bfont-size:large=3B">From my experience it's easier to=
install xcrysden in mac via fink:<br></div><div class=3D"ecxgmail_default"=
style=3D"font-family:'times new roman'=2Cserif=3Bfont-size:large=3B"><br><=
/div><div class=3D"ecxgmail_default" style=3D"font-family:'times new roman'=
=2Cserif=3Bfont-size:large=3B"><a href=3D"http://www.xcrysden.org/News.html=
" target=3D"_blank">http://www.xcrysden.org/News.html</a></div><div class=
=3D"ecxgmail_default" style=3D"font-family:'times new roman'=2Cserif=3Bfont=
-size:large=3B"><br></div><div class=3D"ecxgmail_default" style=3D"font-fam=
ily:'times new roman'=2Cserif=3Bfont-size:large=3B">If you haven't installe=
d fink in your mac yet=2C this is how you do it:</div><div class=3D"ecxgmai=
l_default" style=3D"font-family:'times new roman'=2Cserif=3Bfont-size:large=
=3B"><br></div><div class=3D"ecxgmail_default" style=3D"font-family:'times =
new roman'=2Cserif=3Bfont-size:large=3B"><a href=3D"http://www.finkproject.=
org/doc/bundled/install-first.php" target=3D"_blank">http://www.finkproject=
.org/doc/bundled/install-first.php</a></div><div class=3D"ecxgmail_default"=
style=3D"font-family:'times new roman'=2Cserif=3Bfont-size:large=3B"><br><=
/div><div class=3D"ecxgmail_default" style=3D"font-family:'times new roman'=
=2Cserif=3Bfont-size:large=3B">Once you have fink in your mac you just exec=
ute the following command:</div><div class=3D"ecxgmail_default" style=3D"fo=
nt-family:'times new roman'=2Cserif=3Bfont-size:large=3B"><br></div><div cl=
ass=3D"ecxgmail_default" style=3D"font-family:'times new roman'=2Cserif=3Bf=
ont-size:large=3B"><span style=3D"color:rgb(0=2C0=2C0)=3Bfont-family:courie=
r=2Cnew-courier=2Cconsole=2Cmonospace=3Bfont-size:16px=3Btext-align:justify=
=3Bbackground-color:rgb(229=2C229=2C255)=3B">fink install xcrysden</span><b=
r></div><div class=3D"ecxgmail_default" style=3D"font-family:'times new rom=
an'=2Cserif=3Bfont-size:large=3B"><br></div><div class=3D"ecxgmail_default"=
style=3D"font-family:'times new roman'=2Cserif=3Bfont-size:large=3B">Hope =
that helps. =3B</div><div class=3D"ecxgmail_default" style=3D"font-fami=
ly:'times new roman'=2Cserif=3Bfont-size:large=3B"><br></div><div class=3D"=
ecxgmail_default" style=3D"font-family:'times new roman'=2Cserif=3Bfont-siz=
e:large=3B">Ryky</div></div><div class=3D"ecxgmail_extra"><br><div class=3D=
"ecxgmail_quote">On Sat=2C May 23=2C 2015 at 3:32 AM=2C Mirko Pieropan <spa=
n dir=3D"ltr"><=3B<a href=3D"mailto:mirkopan91 at hotmail.it" target=3D"_bla=
nk">mirkopan91 at hotmail.it</a>>=3B</span> wrote:<br><blockquote class=3D"e=
cxgmail_quote" style=3D"border-left:1px #ccc solid=3Bpadding-left:1ex=3B">=
=0A=
=0A=
=0A=
<div><div dir=3D"ltr">Hello everybody=2C<div>I'm having troubles installing=
XCrysDen on my Mac Os X.</div><div>I've successfully untarred the download=
file and then I've attempted to run the xcrysden file.</div><div>Maybe I'm=
doing something wrong but it seems there is no =3B<span style=3D"font-=
family:Menlo=3Bfont-size:11px=3B">bin/xcrys folder!</span></div><div>I get =
the following in my terminal:</div><div><p style=3D"font-size:11px=3Bfont-f=
amily:Menlo=3B">MBP-di-Mirko:xcrysden-1.5.60 mirko$ ./xcrysden =3B</p>=
=0A=
<p style=3D"font-size:11px=3Bfont-family:Menlo=3Bmin-height:13px=3B"><br></=
p>=0A=
<p style=3D"font-size:11px=3Bfont-family:Menlo=3B">+-----------------------=
------------------------------------------+</p>=0A=
<p style=3D"font-size:11px=3Bfont-family:Menlo=3B">|***********************=
******************************************|</p>=0A=
<p style=3D"font-size:11px=3Bfont-family:Menlo=3B">|*  =3B  =3B &nb=
sp=3B  =3B  =3B  =3B  =3B  =3B  =3B  =3B  =
=3B  =3B  =3B  =3B  =3B  =3B  =3B  =3B  =3B=
 =3B  =3B  =3B  =3B  =3B  =3B  =3B  =3B &n=
bsp=3B  =3B  =3B  =3B *|</p>=0A=
<p style=3D"font-size:11px=3Bfont-family:Menlo=3B">|* =3B XCrySDen -- (=
X-Window) CRYstalline Structures and DENsities =3B *|</p>=0A=
<p style=3D"font-size:11px=3Bfont-family:Menlo=3B">|*  =3B  =3B &nb=
sp=3B  =3B  =3B  =3B  =3B =3D  =3B  =3B  =3B &n=
bsp=3B =3D=3D=3D  =3B  =3B  =3B  =3B =3D =3B  =3B &=
nbsp=3B  =3B  =3B  =3B  =3B =3D=3D=3D =3B  =3B &nbs=
p=3B  =3B *|</p>=0A=
<p style=3D"font-size:11px=3Bfont-family:Menlo=3B">|*----------------------=
-----------------------------------------*|</p>=0A=
<p style=3D"font-size:11px=3Bfont-family:Menlo=3B">|*  =3B  =3B &nb=
sp=3B  =3B  =3B  =3B  =3B  =3B  =3B  =3B  =
=3B  =3B  =3B  =3B  =3B  =3B  =3B  =3B  =3B=
 =3B  =3B  =3B  =3B  =3B  =3B  =3B  =3B &n=
bsp=3B  =3B  =3B  =3B *|</p>=0A=
<p style=3D"font-size:11px=3Bfont-family:Menlo=3B">|* =3B  =3B Anto=
n Kokalj (<a href=3D"mailto:tone.kokalj at ijs.si" target=3D"_blank">tone.koka=
lj at ijs.si</a>) =3B  =3B  =3B  =3B  =3B  =3B  =
=3B  =3B  =3B  =3B  =3B  =3B  =3B *|</p>=0A=
<p style=3D"font-size:11px=3Bfont-family:Menlo=3B">|* =3B  =3B Joze=
f Stefan Institute=2C Ljubljana=2C Slovenia =3B  =3B  =3B  =
=3B  =3B  =3B  =3B  =3B *|</p>=0A=
<p style=3D"font-size:11px=3Bfont-family:Menlo=3B">|*  =3B  =3B &nb=
sp=3B  =3B  =3B  =3B  =3B  =3B  =3B  =3B  =
=3B  =3B  =3B  =3B  =3B  =3B  =3B  =3B  =3B=
 =3B  =3B  =3B  =3B  =3B  =3B  =3B  =3B &n=
bsp=3B  =3B  =3B  =3B *|</p>=0A=
<p style=3D"font-size:11px=3Bfont-family:Menlo=3B">|* =3B  =3B Copy=
right (c) 1996--2014 by Anton Kokalj  =3B  =3B  =3B  =3B &n=
bsp=3B  =3B  =3B  =3B  =3B *|</p>=0A=
<p style=3D"font-size:11px=3Bfont-family:Menlo=3B">|*  =3B  =3B &nb=
sp=3B  =3B  =3B  =3B  =3B  =3B  =3B  =3B  =
=3B  =3B  =3B  =3B  =3B  =3B  =3B  =3B  =3B=
 =3B  =3B  =3B  =3B  =3B  =3B  =3B  =3B &n=
bsp=3B  =3B  =3B  =3B *|</p>=0A=
<p style=3D"font-size:11px=3Bfont-family:Menlo=3B">|***********************=
******************************************|</p>=0A=
<p style=3D"font-size:11px=3Bfont-family:Menlo=3B">+-----------------------=
------------------------------------------+</p>=0A=
<p style=3D"font-size:11px=3Bfont-family:Menlo=3Bmin-height:13px=3B"><br></=
p>=0A=
<p style=3D"font-size:11px=3Bfont-family:Menlo=3B"> =3B Version: 1.5.60=
</p>=0A=
<p style=3D"font-size:11px=3Bfont-family:Menlo=3Bmin-height:13px=3B"><br></=
p>=0A=
<p style=3D"font-size:11px=3Bfont-family:Menlo=3B"> =3B Please report b=
ugs to: <a href=3D"mailto:tone.kokalj at ijs.si" target=3D"_blank">tone.kokalj=
@ijs.si</a></p>=0A=
<p style=3D"font-size:11px=3Bfont-family:Menlo=3Bmin-height:13px=3B"><br></=
p>=0A=
<p style=3D"font-size:11px=3Bfont-family:Menlo=3Bmin-height:13px=3B"><br></=
p>=0A=
<p style=3D"font-size:11px=3Bfont-family:Menlo=3B"> =3B TERMS OF USE:</=
p>=0A=
<p style=3D"font-size:11px=3Bfont-family:Menlo=3B"> =3B -------------</=
p>=0A=
<p style=3D"font-size:11px=3Bfont-family:Menlo=3B"> =3B XCRYSDEN is rel=
eased under the GNU General Public License.</p>=0A=
<p style=3D"font-size:11px=3Bfont-family:Menlo=3Bmin-height:13px=3B"><br></=
p>=0A=
<p style=3D"font-size:11px=3Bfont-family:Menlo=3B"> =3B Whenever graphi=
cs generated by XCRYSDEN are used in scientific</p>=0A=
<p style=3D"font-size:11px=3Bfont-family:Menlo=3B"> =3B publications=2C=
it shall be greatly appreciated to include an explicit</p>=0A=
<p style=3D"font-size:11px=3Bfont-family:Menlo=3B"> =3B reference. The =
preferred form is the following:</p>=0A=
<p style=3D"font-size:11px=3Bfont-family:Menlo=3Bmin-height:13px=3B"><br></=
p>=0A=
<p style=3D"font-size:11px=3Bfont-family:Menlo=3B"> =3B [ref] A. Kokalj=
=2C J. Mol. Graph. Model.=2C Vol. 17=2C pp. 176-179=2C 1999.</p>=0A=
<p style=3D"font-size:11px=3Bfont-family:Menlo=3B"> =3B  =3B  =
=3B  =3B Code available from <a href=3D"http://www.xcrysden.org/" targe=
t=3D"_blank">http://www.xcrysden.org/</a>.</p>=0A=
<p style=3D"font-size:11px=3Bfont-family:Menlo=3Bmin-height:13px=3B"><br></=
p>=0A=
<p style=3D"font-size:11px=3Bfont-family:Menlo=3B">XCRYSDEN_TOPDIR=3D/Users=
/mirko/Desktop/xcrysden-1.5.60</p>=0A=
<p style=3D"font-size:11px=3Bfont-family:Menlo=3B">XCRYSDEN_SCRATCH=3D/var/=
folders/g8/2m80kqls4m750q_phtmbmwxc0000gn/T/</p>=0A=
<p style=3D"font-size:11px=3Bfont-family:Menlo=3Bmin-height:13px=3B"><br></=
p>=0A=
<p style=3D"font-size:11px=3Bfont-family:Menlo=3B">./xcrysden: line 257: /U=
sers/mirko/Desktop/xcrysden-1.5.60/bin/xcrys: No such file or directory</p>=
<p style=3D"font-size:11px=3Bfont-family:Menlo=3B"><br></p><p style=3D"font=
-size:11px=3Bfont-family:Menlo=3B">Can anybody help?</p><p style=3D"font-si=
ze:11px=3Bfont-family:Menlo=3B">Thank you very much in advance.</p><span cl=
ass=3D"ecxHOEnZb"><font color=3D"#888888"><p style=3D"font-size:11px=3Bfont=
-family:Menlo=3B"><br></p><p style=3D"font-size:11px=3Bfont-family:Menlo=3B=
">Mirko</p></font></span></div> </div></div>=0A=
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XCrySDen mailing list<br>=0A=
<a href=3D"mailto:XCrySDen at democritos.it">XCrySDen at democritos.it</a><br>=0A=
<a href=3D"http://www.democritos.it/mailman/listinfo/xcrysden" target=3D"_b=
lank">http://www.democritos.it/mailman/listinfo/xcrysden</a><br>=0A=
<br></blockquote></div><br></div>=0A=
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XCrySDen at democritos.it=0A=
http://www.democritos.it/mailman/listinfo/xcrysden</div></div> <=
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